MIR3940 (microRNA 3940)

Gene Basic Information

Gene Basic Information

symbol:
MIR3940
locus group:
non-coding RNA
location:
19p13.3
gene_family:
MicroRNAs
alias symbol:
hsa-mir-3940
alias name:
None
entrez id:
100500888
ensembl gene id:
ENSG00000284159
ucsc gene id:
uc021unp.1
refseq accession:
NR_037505
hgnc_id:
HGNC:38893
approved reserved:
2010-09-15

Chromosome Location

Chromosome Location

19p13.3

Gene Summary

Gene Summary

ChineseEnglish

microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

OMIM entry for MIR3940     Wikipedia entry for MIR3940

Gene Sequence

Gene Sequence

Nucleotide sequence of MIR3940:[NCBI]
Loading Gene Browser...

Gene Variants

Gene Variants

SNP variants of MIR3940:           Showing partial SNPs
rs2258496       rs2305058       rs2860167       rs3786689       rs10405418       rs28400347       rs72983829       rs73565848       rs73920663       rs74489818       rs77809861       rs78190198       rs80332810       rs112375724       rs112523079       rs113515142       rs115090110      

Gene Expression

Gene Expression

Tissue expression of MIR3940:    [UniProt]

Gene expression across tissues

Gene Primers

Gene Primers

Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
AAAGATCGAGGTGGGTTGG
60
GTAACCAAGGTAAGTGGGC
58
AAAGATCGAGGTGGGTTGG
60
TAACCAAGGTAAGTGGGCT
58
AAAGATCGAGGTGGGTTGG
60
TAACCAAGGTAAGTGGGCTG
60

Transcription Factors

Transcription Factors

      No data available

Gene Ontology

Subcellular localization of MIR3940 (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for MIR3940:

Related microRNA

Related microRNA

microRNAs potentially regulating MIR3940:     

Gene Interactions

Gene Interactions

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Interacting Gene Interaction Source/Score

Gene Pathways

Gene Pathways

Related Diseases

Related Diseases

Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source

Related Publications

Related Publications

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