PAX7 (paired box 7)

symbol
PAX7
locus group
protein-coding gene
location
1p36.13
gene_family
PRD class homeoboxes and pseudogenes|Paired boxes
alias symbol
Hup1
alias name
None
entrez id
5081
ensembl gene id
ENSG00000009709
ucsc gene id
uc010oct.3
refseq accession
NM_002584
hgnc_id
HGNC:8621
approved reserved
1992-11-20
1p36.13
ChineseEnglish

PAX7 is a member of the paired box (PAX) transcription factor family, a group of nine evolutionarily conserved proteins (PAX1–PAX9) that share a highly conserved DNA-binding domain enabling precise regulation of target gene expression during embryonic development, cellular differentiation, and tissue homeostasis. Distinct from other PAX family members, such as PAX6 which governs ocular development, PAX7 exhibits a specialized role in the regulation of skeletal muscle satellite cells, where it is highly expressed and serves as a master regulator of muscle stem cell identity. By activating downstream targets such as Myf5, PAX7 maintains the self-renewal capacity of satellite cells, preserves their undifferentiated state, and prevents premature myogenic commitment, thereby ensuring the stability of the stem cell reservoir necessary for muscle repair. Upon muscle injury, PAX7 drives the proliferation of activated satellite cells to facilitate regeneration, and its dysregulation has profound pathological consequences: loss-of-function mutations reduce satellite cell numbers or impair their function, leading to congenital myopathies or defective muscle regeneration, whereas overexpression, often resulting from chromosomal translocations, is strongly associated with rhabdomyosarcoma, a malignant tumor of muscle origin. Furthermore, abnormal PAX7 expression levels disrupt muscle homeostasis, with excessive expression promoting aberrant satellite cell proliferation and inhibiting terminal myocyte differentiation, while insufficient expression compromises regenerative capacity and accelerates muscle atrophy. Beyond its primary role in muscle biology, PAX7 is also implicated in neural crest cell development, where mutations may affect the formation of melanocytes and specific neuronal populations, underscoring its broader significance in developmental biology and its critical importance in regenerative medicine.

Nucleotide sequence of PAX7:[NCBI]
Loading Gene Browser...
Protein Sequence
1MAALPGTVPR MMRPAPGQNY PRTGFPLEVS TPLGQGRVNQ
41LGGVFINGRP LPNHIRHKIV EMAHHGIRPC VISRQLRVSH
81 GCVSKILCR YQETGSIRPG AIGGSKPRQV ATPDVEKKIE
121EYKRENPGMF SWEIRDRLLK DGHCDRSTVP SGLVSSISRV
161L RIKFGKKE EEDEADKKED DGEKKAKHSI DGILGDKGNR
201LDEGSDVESE PDLPLKRKQR RSRTTFTAEQ LEELEKAFER
241TH YPDIYTR EELAQRTKLT EARVQVWFSN RRARWRKQAG
281ANQLAAFNHL LPGGFPPTGM PTLPPYQLPD STYPTTTISQ
321DGG STVHRP QPLPPSTMHQ GGLAAAAAAA DTSSAYGARH
361SFSSYSDSFM NPAAPSNHMN PVSNGLSPQV MSILGNPSAV
401PPQP QADFS ISPLHGGLDS ATSISASCSQ RADSIKPGDS
441LPTSQAYCPP TYSTTGYSVD PVAGYQYGQY GQTAVDYLAK
481NVSLS TQRR MKLGEHSAVL GLLPVETGQA Y
Structure predicted by AlphaFold DB(UniProt: P23759). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of PAX7:           Showing partial SNPs
rs84353       rs480856       rs485874       rs501080       rs515124       rs515739       rs518459       rs523997       rs524568       rs526265       rs545044       rs545793       rs551027       rs553934       rs556630       rs568991       rs570242      
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
ATGTTCAGCTGGGAGATCC
59
CGGCTAATCGAACTCACTG
58
GACTCCATCAAGCCAGGAG
60
GATAATCAACAGCAGTCTGGC
60
TGCCCTCAGGTTTAGTGAG
59
TCTTGTCCGCTTCATCCTC
60
CTACCCAGACATATACACCCG
60
TTACTGAACCAGACCTGCA
59
ATGTTCAGCTGGGAGATCC
59
AACTCACTAAACCTGAGGGC
60
CTCCATCAAGCCAGGAGAC
60
CAGATAATCAACAGCAGTCTGG
59
TACCCAGACATATACACCCG
58
GTTACTGAACCAGACCTGC
58
ATGTTCAGCTGGGAGATCC
59
TAATCGAACTCACTGAGGGC
60
CTCCATCAAGCCAGGAGAC
60
GATAATCAACAGCAGTCTGGC
60
ACTACCCAGACATATACACCC
59
TACTGAACCAGACCTGCAC
59

Subcellular localization of PAX7 (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for PAX7:

GO ID
Protein
Source DB
GO:0000983
P23759 (UniProtKB)
IEA
GO:0003700
P23759 (UniProtKB)
TAS
GO:0005634
P23759 (UniProtKB)
IEA
GO:0006338
P23759 (UniProtKB)
IEA
GO:0006351
P23759 (UniProtKB)
IEA
GO:0009653
P23759 (UniProtKB)
TAS
GO:0010453
P23759 (UniProtKB)
IEA
GO:0014813
P23759 (UniProtKB)
IEA
GO:0021527
P23759 (UniProtKB)
IEA
GO:0021904
P23759 (UniProtKB)
IEA
GO:0031062
P23759 (UniProtKB)
IEA
GO:0043066
P23759 (UniProtKB)
TAS
GO:0043393
P23759 (UniProtKB)
IEA
GO:0043403
P23759 (UniProtKB)
IEA
GO:0043565
P23759 (UniProtKB)
IEA
GO:0045944
P23759 (UniProtKB)
IEA
GO:0048663
P23759 (UniProtKB)
IEA
GO:0048706
P23759 (UniProtKB)
IEA
GO:0051216
P23759 (UniProtKB)
IEA
GO:0060415
P23759 (UniProtKB)
IEA
GO:2000288
P23759 (UniProtKB)
IEA

microRNAs potentially regulating PAX7:     

String
BioGrid
IntAct
mentha
Loading…
Interacting Gene Interaction Source/Score
Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source
Alveolar rhabdomyosarcoma 0.255220608 37 0 BeFree_CTD_human_LHGDN_ORPHANET
Rhabdomyosarcoma 0.01114898 22 0 BeFree_LHGDN
Rhabdomyosarcoma, Embryonal 0.009801702 8 0 BeFree_LHGDN
Narcolepsy 0.002367032 1 0 GAD
Cleft Palate 0.002367032 1 0 GAD
Cleft Lip 0.002367032 1 0 GAD
Parkinson Disease 0.002367032 1 1 GAD
Carcinogenesis 0.000814326 3 0 BeFree
Myopathy 0.000542884 2 0 BeFree
Cleft Lip with or without Cleft Palate 0.000542884 2 0 BeFree
Biallelic PAX7 variants cause a novel Satellite Cell-opathy with progressive muscle involvement resembling facioscapulohumeral muscular dystrophy.
Ganassi M, Strafella C, Savarese M, Heher P, Engquist EN, McGuire L, Johari M, De Nicola GF, Bigot A, Mouly V, Bortolani S, Torchia E, Monforte M, Megalizzi D, Sabino A, Ricci E, Giardina E, Zammit PS, Tasca G Cell Death Dis IF: 12.2 2026-01-29
MIR17HG Expression Is Transcriptionally Regulated by PAX3::FOXO1 and MYCN and is Necessary for Oncogenic Activity in Fusion-Positive Rhabdomyosarcoma.
Zargar S, Raut PK, Kim H, Boudjadi S, Hoffman RA, Stanton BZ, Barr FG Mol Cancer Res IF: 5.8 2026-08-17
African pygmy mouse iPSCs as a model for in vitro embryogenesis, interspecies chimerism, and blastocyst complementation.
Gjonlleshaj P, Lenardič A, Tarnowska-Sengül M, Taborsky D, Trautmann CL, Agostinho de Sousa J, Bundschuh N, Veyrunes F, Sendoel A, Bar-Nur O Cell Rep Methods IF: 5.8 2026-01-27
Chemoradiation (CCRT) Effects on Head and Neck Muscles: Insights Into CCRT-Induced Dysphagia.
Amin MR, Gould M, Severa E, Kravietz A, Achlatis S, Tesema N, Best KA, Garber D, Strum D, Yang J, Johnson AM Laryngoscope IF: 2.0 2026-07-12
Sex differences in metabolic remodeling and skeletal muscle regeneration following cardiotoxin-induced injury.
Jin JB, Soukup T, Robinson A, Black E, Williams A, Pranay A, Humphries K, Kim DY, Kim Y, Lucas E, Hammer SM, Bae J Sci Rep IF: 4.9 2026-07-13
Clostridium sporogenes and its tryptophan metabolite indole -3- propionic acid repair antibiotic-induced muscle atrophy in mice.
Liu X, Yang Y, Qiu X, Wang J, Wang Q, Yang F, Liu Z, Qi R J Nutr Biochem IF: 5.2 2026-02-00
Chemogenomic maps reveal a PRDX1-dependent iron-damage axis in the DNA damage response.
O'Loughlin TA, Arab A, Misiukiewicz S, Montesano E, Yogodzinski C, Borah AA, Quarantotti V, Lou K, Rosen BS, Corn JE, Gianni D, Kabir S, Forment JV, Gilbert LA Nat Chem Biol IF: 15.8 2026-09-08
Histological analysis of the semitendinosus muscle in young children with cerebral palsy compared to age matched typically developing children.
Deschrevel JM, Andries AA, Maes K, De Beukelaer NM, Corvelyn M, Staut LM, De Houwer H, Costamagna D, Metsemakers WJ, Nijs S, Nijs E, Hens G, Desloovere K, Van Campenhout A, Gayan-Ramirez G J Anat IF: 2.2 2025-09-24
Involvement of Fibro-Adipogenic Progenitors and Cellular Communication Network Family Signaling in the Impaired Muscle Regeneration of Wooden Breast.
Kobayashi R, Hosotani M, Saito K, Masuda Y, Kawasaki T, Takahashi N, Hasegawa Y, Iwasaki T, Watanabe T J Poult Sci IF: 2.1 None

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