RHO (rhodopsin)

symbol
RHO
locus group
protein-coding gene
location
3q22.1
gene_family
Opsin receptors
alias symbol
OPN2|CSNBAD1
alias name
opsin 2, rod pigment
entrez id
6010
ensembl gene id
ENSG00000163914
ucsc gene id
uc003emt.4
refseq accession
NM_000539
hgnc_id
HGNC:10012
approved reserved
1986-01-01
3q22.1
ChineseEnglish

The RHO gene encodes rhodopsin, the principal photopigment of rod photoreceptor cells in the retina and a canonical member of the opsin subfamily of class A G protein-coupled receptors. Like all members of this receptor superfamily, rhodopsin is composed of seven transmembrane α-helices linked by extracellular and cytoplasmic loops, with a covalently bound 11-cis-retinal chromophore anchored in the seventh transmembrane helix that confers its exquisite spectral sensitivity to dim light. In the dark-adapted state the receptor rests in an inactive conformation; upon absorption of even a single photon, the 11-cis-retinal undergoes rapid isomerization to all-trans-retinal, driving a cascade of conformational rearrangements that convert the receptor to its active Metarhodopsin II form. This activated state engages the Gα subunit of transducin (GNAT1), which in turn stimulates phosphodiesterase-6 to hydrolyze cyclic GMP, causing closure of cGMP-gated cation channels in the outer-segment membrane and hyperpolarization of the rod cell, thereby transducing a light signal into the electrical response that is relayed through the retinal circuitry to the visual cortex. RHO is expressed almost exclusively in rod photoreceptors, where it is present in extraordinary abundance—on the order of ten million to ten million molecules per outer-segment disc—making rods the most light-sensitive cells in the human eye. Mutations in RHO constitute the single most frequent genetic cause of autosomal dominant retinitis pigmentosa (adRP), accounting for roughly twenty to thirty percent of all adRP cases, and the pathogenic spectrum encompasses missense substitutions, nonsense mutations, and small in-frame deletions. The two most prevalent missense alleles, P23H (a proline-to-histidine substitution in the first extracellular loop) and R135W (an arginine-to-tryptophan substitution in the sixth transmembrane helix), disrupt proper rhodopsin folding and trafficking, causing the misfolded protein to accumulate in the endoplasmic reticulum and chronically activate the unfolded protein response. Persistent ER stress, compounded by the toxic gain-of-function effects of certain mutants that aberrantly couple to transducin in the absence of light, ultimately engages apoptotic pathways and drives progressive rod cell death, which is followed secondarily by cone degeneration and the characteristic concentric constriction of the visual field. Conversely, hypomorphic or null mutations that reduce rhodopsin expression below a critical threshold impair the rod's capacity to generate a light response, manifesting clinically as nyctalopia and, in severe cases, congenital stationary night blindness. Phenotypic severity and age of onset vary considerably among RHO mutation carriers: mutations that perturb the cytoplasmic loops or the transducin-coupling interface tend to produce an aggressive, early-onset course with rapid photoreceptor loss, whereas those affecting the extracellular loops or the retinal-binding pocket often yield a milder, later-onset phenotype, underscoring the structure–function relationship that governs disease expression. This heterogeneity, together with the well-characterized molecular mechanisms underlying mutant rhodopsin toxicity, has made RHO one of the most intensively studied targets in retinal gene therapy, with strategies spanning antisense oligonucleotides, small-molecule chaperones, CRISPR/Cas9-mediated allele correction, and adeno-associated virus–mediated delivery of a corrected RHO transcript, all of which aim to restore proper rhodopsin homeostasis and halt the progressive photoreceptor degeneration that defines the disease.

Nucleotide sequence of RHO:[NCBI]
Loading Gene Browser...
Protein Sequence
1MNGTEGPNFY VPFSNATGVV RSPFEYPQYY LAEPWQFSML
41AAYMFLLIVL GFPINFLTLY VTVQHKKLRT PLNYILLNLA
81 VADLFMVLG GFTSTLYTSL HGYFVFGPTG CNLEGFFATL
121GGEIALWSLV VLAIERYVVV CKPMSNFRFG ENHAIMGVAF
161T WVMALACA APPLAGWSRY IPEGLQCSCG IDYYTLKPEV
201NNESFVIYMF VVHFTIPMII IFFCYGQLVF TVKEAAAQQQ
241ES ATTQKAE KEVTRMVIIM VIAFLICWVP YASVAFYIFT
281HQGSNFGPIF MTIPAFFAKS AAIYNPVIYI MMNKQFRNCM
321LTT ICCGKN PLGDDEASAT VSKTETSQVA PA
Structure predicted by AlphaFold DB(UniProt: P08100). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of RHO:           Showing partial SNPs
rs2410       rs7984       rs2071092       rs2071093       rs2269736       rs2625953       rs2625954       rs2625955       rs2855552       rs2855557       rs2855558       rs3733148       rs3733149       rs3755837       rs6803468       rs6803484       rs11359208      

Tissue expression of RHO:    [UniProt]

Gene expression across tissues
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
ATGATGAACAAGCAGTTCCG
59
GTCCTAGGCAGGTCTTAGG
59
TGATGAACAAGCAGTTCCG
59
GTCCTAGGCAGGTCTTAGG
59
GATGAACAAGCAGTTCCGG
59
GTCCTAGGCAGGTCTTAGG
59
Transcription Factors
Target Gene
Interaction Type
PubMed References
CRX
RHO
Repression
KLF15
RHO
Repression
KLF15
RHO
Unknown
NR2E3
RHO
Activation
NRL
RHO
Repression
NRL
RHO
Unknown
SOX2
RHO
Repression

Subcellular localization of RHO (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for RHO:

GO ID
Protein
Source DB
GO:0000139
P08100 (UniProtKB)
TAS
GO:0000139
P08100 (UniProtKB)
TAS
GO:0000139
P08100 (UniProtKB)
TAS
GO:0000139
P08100 (UniProtKB)
TAS
GO:0000139
P08100 (UniProtKB)
TAS
GO:0000139
P08100 (UniProtKB)
TAS
GO:0001523
P08100 (UniProtKB)
TAS
GO:0001750
P08100 (UniProtKB)
IDA
GO:0001750
P08100 (UniProtKB)
IDA
GO:0001917
P08100 (UniProtKB)
IDA
GO:0004930
P08100 (UniProtKB)
TAS
GO:0005515
P08100 (UniProtKB)
IPI
GO:0005515
P08100 (UniProtKB)
IPI
GO:0005794
P08100 (UniProtKB)
IDA
GO:0005886
P08100 (UniProtKB)
IDA
GO:0005887
P08100 (UniProtKB)
TAS
GO:0005911
P08100 (UniProtKB)
IEA
GO:0006468
P08100 (UniProtKB)
IEA
GO:0007186
P08100 (UniProtKB)
TAS
GO:0007601
P08100 (UniProtKB)
IEA
GO:0007603
P08100 (UniProtKB)
TAS
GO:0008020
P08100 (UniProtKB)
IBA
GO:0009585
P08100 (UniProtKB)
IEA
GO:0016038
P08100 (UniProtKB)
ISS
GO:0016038
P08100 (UniProtKB)
ISS
GO:0016056
P08100 (UniProtKB)
TAS
GO:0016918
P08100 (UniProtKB)
IEA
GO:0018298
P08100 (UniProtKB)
IEA
GO:0022400
P08100 (UniProtKB)
TAS
GO:0030660
P08100 (UniProtKB)
TAS
GO:0030660
P08100 (UniProtKB)
TAS
GO:0030660
P08100 (UniProtKB)
TAS
GO:0030867
P08100 (UniProtKB)
IEA
GO:0042622
P08100 (UniProtKB)
IDA
GO:0045494
P08100 (UniProtKB)
IEA
GO:0046872
P08100 (UniProtKB)
IEA
GO:0060041
P08100 (UniProtKB)
IEA
GO:0060170
P08100 (UniProtKB)
TAS
GO:0060342
P08100 (UniProtKB)
IDA
GO:0097381
P08100 (UniProtKB)
TAS
GO:0097381
P08100 (UniProtKB)
TAS
GO:0097381
P08100 (UniProtKB)
TAS
GO:0097381
P08100 (UniProtKB)
TAS
GO:0097381
P08100 (UniProtKB)
TAS
GO:0097381
P08100 (UniProtKB)
TAS
GO:0097381
P08100 (UniProtKB)
TAS
String
BioGrid
IntAct
mentha
Reactome
Loading…
Interacting Gene Interaction Source/Score
Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source
Retinitis Pigmentosa 0.464557081 149 14 BeFree_CLINVAR_CTD_human_GAD_LHGDN_ORPHANET
Night Blindness, Congenital Stationary, Autosomal Dominant 1 0.44 3 3 CLINVAR_CTD_human_MGD_UNIPROT
Retinitis Pigmentosa 4 0.44 17 34 CLINVAR_CTD_human_MGD_UNIPROT
Night blindness, congenital stationary 0.241900093 7 2 BeFree_CTD_human_ORPHANET
Fundus Albipunctatus 0.240542884 2 0 BeFree_CTD_human_ORPHANET
Retinal Degeneration 0.130314791 39 3 BeFree_CTD_human
Retinitis punctata albescens (disorder) 0.122909916 2 1 BeFree_CLINVAR_GAD
Autosomal dominant retinitis pigmentosa 0.037925917 131 13 BeFree_GAD
Retinal Diseases 0.010987159 15 1 BeFree_GAD_LHGDN
Night Blindness 0.006991475 8 2 BeFree_GAD_LHGDN
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