SEC13 (SEC13 homolog, nuclear pore and COPII coat complex component)

symbol
SEC13
locus group
protein-coding gene
location
3p25.3
gene_family
WD repeat domain containing
alias symbol
SEC13R|npp-20
alias name
None
entrez id
6396
ensembl gene id
ENSG00000157020
ucsc gene id
uc003bvn.5
refseq accession
NM_001136026
hgnc_id
HGNC:10697
approved reserved
1994-12-15
3p25.3
ChineseEnglish

SEC13 is a highly conserved gene encoding a core structural component of the COPII (coat protein complex II) vesicular transport machinery, which governs the critical anterograde trafficking of newly synthesized proteins from the endoplasmic reticulum (ER) to the Golgi apparatus. The SEC13 protein, characterized by the presence of WD40 repeat domains that serve as versatile protein-protein interaction modules, stabilizes the assembly of the COPII coat alongside other essential subunits such as SEC31 and the SEC23/SEC24 heterodimer, thereby facilitating the budding of transport vesicles from the ER membrane. Proper function of this complex is vital for maintaining cellular homeostasis; consequently, loss-of-function mutations in SEC13 can lead to the accumulation of misfolded or untransported proteins within the ER, triggering the unfolded protein response (UPR) and ER stress. Such defects have been implicated in the pathogenesis of congenital disorders of glycosylation (CDG) and certain hepatic diseases, while also contributing to neurodegenerative conditions like Alzheimer’s disease through the failure to clear toxic protein aggregates. Conversely, dysregulated expression of SEC13, whether through overexpression that may cause ER membrane depletion and Golgi dysfunction or through downregulation that impairs vesicle formation and secretion, can compromise cellular viability and potentially induce apoptosis. Beyond its canonical role in the secretory pathway, SEC13 is also involved in vascular biology, where its aberrant expression has been linked to tumor angiogenesis, highlighting its multifaceted role in maintaining membrane dynamics and its significance in both physiological and pathological contexts.

Nucleotide sequence of SEC13:[NCBI]
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Protein Sequence
1MVSVINTVDT SHEDMIHDAQ MDYYGTRLAT CSSDRSVKIF
41DVRNGGQILI ADLRGHEGPV WQVAWAHPMY GNILASCSYD
81 RKVIIWREE NGTWEKSHEH AGHDSSVNSV CWAPHDYGLI
121LACGSSDGAI SLLTYTGEGQ WEVKKINNAH TIGCNAVSWA
161P AVVPGSLI DHPSGQKPNY IKRFASGGCD NLIKLWKEEE
201DGQWKEEQKL EAHSDWVRDV AWAPSIGLPT STIASCSQDG
241RV FIWTCDD ASSNTWSPKL LHKFNDVVWH VSWSITANIL
281AVSGGDNKVT LWKESVDGQW VCISDVNKGQ GSVSASVTEG
321QQN EQ
Structure predicted by AlphaFold DB(UniProt: P55735). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of SEC13:           Showing partial SNPs
rs28349       rs35668       rs35669       rs35670       rs35671       rs35672       rs35673       rs40515       rs83604       rs118693       rs118694       rs149162       rs151730       rs154235       rs154236       rs154237       rs154238      

Tissue expression of SEC13:    [UniProt]

Gene expression across tissues
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
ATGAGGACATGATTCACGAC
57
GATAAGGATCTGCCCTCCA
58
GTGCTTACTTGGGCTTGTG
59
GGTATCCACAGTGTTAATTACTGAC
59
ATCAAGCTGTGGAAGGAGG
59
ACATCTCGAACCCAGTCAC
59
TGGTGGAGACAATAAGGCAG
59
AACTCCTTGAGGGTGAGGA
59
TGACTGGGTTCGAGATGTG
59
TGAGGCATCATCACAGGTC
59
AGCTGCTTAAGTGACTTCG
57
AGCAGTTCAAGAGGTACAC
57
ACCGGAAAGTCATTATCTGGA
59
CACCGAGTTCACTGAGGAG
59
GACCGGAAAGTCATTATCTGG
58
CCGAGTTCACTGAGGAGTC
59
CATCAAGCTGTGGAAGGAG
58
ATCTCGAACCCAGTCACTG
59
TGGAGACAATAAGGCAGGC
59
CAACTCCTTGAGGGTGAGG
59

Subcellular localization of SEC13 (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for SEC13:

GO ID
Protein
Source DB
GO:0005654
A8MXL6 (UniProtKB)
IDA
GO:0043231
A8MXL6 (UniProtKB)
IDA
GO:0000139
P55735 (UniProtKB)
IEA
GO:0002474
P55735 (UniProtKB)
TAS
GO:0005515
P55735 (UniProtKB)
IPI
GO:0005515
P55735 (UniProtKB)
IPI
GO:0005515
P55735 (UniProtKB)
IPI
GO:0005515
P55735 (UniProtKB)
IPI
GO:0005515
P55735 (UniProtKB)
IPI
GO:0005515
P55735 (UniProtKB)
IPI
GO:0005515
P55735 (UniProtKB)
IPI
GO:0005515
P55735 (UniProtKB)
IPI
GO:0005515
P55735 (UniProtKB)
IPI
GO:0005515
P55735 (UniProtKB)
IPI
GO:0005635
P55735 (UniProtKB)
IDA
GO:0005654
P55735 (UniProtKB)
IDA
GO:0005789
P55735 (UniProtKB)
TAS
GO:0005789
P55735 (UniProtKB)
TAS
GO:0005789
P55735 (UniProtKB)
TAS
GO:0005789
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0005829
P55735 (UniProtKB)
TAS
GO:0006886
P55735 (UniProtKB)
NAS
GO:0007062
P55735 (UniProtKB)
TAS
GO:0012507
P55735 (UniProtKB)
TAS
GO:0012507
P55735 (UniProtKB)
TAS
GO:0012507
P55735 (UniProtKB)
TAS
GO:0012507
P55735 (UniProtKB)
TAS
GO:0012507
P55735 (UniProtKB)
TAS
GO:0012507
P55735 (UniProtKB)
TAS
GO:0012507
P55735 (UniProtKB)
TAS
GO:0019886
P55735 (UniProtKB)
TAS
GO:0031080
P55735 (UniProtKB)
NAS
GO:0031080
P55735 (UniProtKB)
IDA
GO:0032008
P55735 (UniProtKB)
IMP
GO:0043231
P55735 (UniProtKB)
IDA
GO:0048208
P55735 (UniProtKB)
TAS
GO:0051028
P55735 (UniProtKB)
IEA
GO:0061700
P55735 (UniProtKB)
IDA
GO:0070062
P55735 (UniProtKB)
IDA
GO:0000776
P55735 (UniProtKB)
IDA

microRNAs potentially regulating SEC13:     

String
BioGrid
IntAct
mentha
Reactome
Loading…
Interacting Gene Interaction Source/Score
Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source
Von Hippel-Lindau Syndrome 0.000271442 1 0 BeFree
Bufalin suppresses breast cancer bone metastasis through targeting SEC13-mediated osteoclastogenesis.
Li Z, Li X, Yu X, Lam Y, Wang M, Gu J, Lu C, Zhong J, Zhu Y, Jiang X, Yuan Z, Zhang S, Yin P Phytomedicine IF: 11.3 2026-09-00
Dynamic O-GlcNAcylation of Sec23-interacting protein regulates COPII function.
Hirata T, Nguyen Q, Liu C, Boyce M J Biol Chem IF: 3.9 2026-07-22
The moonlighting functions of SEC13 in nonsense-mediated mRNA decay and the regulation of ER stress.
Monaghan L, Srinath C, Mann AR, Roy Choudhury N, Grimes GR, Longman D, Caceres JF RNA IF: 4.3 2026-09-02
Integrative analysis of SEC13: a prognostic predictor and immunotherapeutic target.
Gu Y, Yu Y, Liu K, Jin L, Jiang G Clin Transl Oncol IF: 2.7 2026-07-00
MoSec13 combined with MoGcn5b modulates MoAtg8 acetylation and regulates autophagy in Magnaporthe oryzae.
Qian H, Wu MH, Zhao WH, Zhu XM, Sun LX, Lu JP, Klionsky DJ, Lin FC, Liu XH Autophagy IF: 18.6 2025-10-00
Exometabolome of Pantoea targets pathogen associated scytalone dehydratase and XopQ for suppression of foliar blast and bacterial blight in rice.
Krishnappa C, Javed M, Balamurugan A, Kumar S, Velmurugan S, Kundu A, Kulkarni P, Venkadasamy G, Raaijmakers JM, Kumar A Int J Biol Macromol IF: 8.7 2025-07-00
Interaction networks of SIM-binding groove mutants reveal alternate modes of SUMO binding and profound impact on SUMO conjugation.
Claessens LA, Verlaan-de Vries M, Broekman N, Luijsterburg MS, Vertegaal ACO Sci Adv IF: 12.5 2025-05-16
A Report of a Child with SEC31A-Related Neurodevelopmental Disorder.
AlTassan R, AlQudairy H, Saydo B, Alammari A, Londoño KJC, Ramzan K, Colak D, Arold ST, Kaya N Int J Mol Sci IF: 3.687 2025-05-30

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