XPC (XPC complex subunit, DNA damage recognition and repair factor)

symbol
XPC
locus group
protein-coding gene
location
3p25.1
gene_family
-
alias symbol
XPCC|RAD4
alias name
xeroderma pigmentosum group C prot…
entrez id
7508
ensembl gene id
ENSG00000154767
ucsc gene id
uc011ave.3
refseq accession
NM_004628
hgnc_id
HGNC:12816
approved reserved
1992-10-05
3p25.1
ChineseEnglish

The XPC gene, standing for xeroderma pigmentosum complementation group C, encodes a critical protein within the nucleotide excision repair (NER) pathway that specializes in the recognition and repair of bulky DNA lesions, particularly pyrimidine dimers induced by ultraviolet (UV) radiation or chemical carcinogens. As a central component of the damage recognition complex, the XPC protein associates with HR23B to form the XPC-HR23B complex, which actively scans the genome to detect helical distortions characteristic of global genome NER (GG-NER). Although the XPC protein lacks intrinsic enzymatic activity, it serves as a vital scaffold that recruits downstream repair factors, such as the TFIIH helicase complex, to initiate the unwinding of the damaged DNA strand. Mutations in XPC result in the autosomal recessive disorder xeroderma pigmentosum (XP), characterized by extreme photosensitivity, a markedly elevated risk of cutaneous malignancies, and potential neurological abnormalities due to the accumulation of unrepaired DNA damage. XPC is one of seven complementary groups (XPA through XPG) within the XP gene family, each contributing to distinct stages of the NER cascade; while XPA verifies damage and XPB/XPD unwind the DNA, XPF/ERCC1 and XPG execute the incision of the damaged strand, collectively ensuring the coordinated removal and resynthesis of the excised segment. Beyond UV-induced damage, XPC also plays a role in repairing oxidative DNA lesions and may influence resistance to chemotherapy, suggesting that its expression levels can modulate genomic stability and impact the efficacy of cancer treatments.

Nucleotide sequence of XPC:[NCBI]
Loading Gene Browser...
Protein Sequence
1MARKRAAGGE PRGRELRSQK SKAKSKARRE EEEEDAFEDE
41KPPKKSLLSK VSQGKRKRGC SHPGGSADGP AKKKVAKVTV
81 KSENLKVIK DEALSDGDDL RDFPSDLKKA HHLKRGATMN
121EDSNEEEEES ENDWEEVEEL SEPVLGDVRE STAFSRSLLP
161V KPVEIEIE TPEQAKTRER SEKIKLEFET YLRRAMKRFN
201KGVHEDTHKV HLLCLLANGF YRNNICSQPD LHAIGLSIIP
241AR FTRVLPR DVDTYYLSNL VKWFIGTFTV NAELSASEQD
281NLQTTLERRF AIYSARDDEE LVHIFLLILR ALQLLTRLVL
321SLQ PIPLKS ATAKGKKPSK ERLTADPGGS SETSSQVLEN
361HTKPKTSKGT KQEETFAKGT CRPSAKGKRN KGGRKKRSKP
401SSSE EDEGP GDKQEKATQR RPHGRERRVA SRVSYKEESG
441SDEAGSGSDF ELSSGEASDP SDEDSEPGPP KQRKAPAPQR
481TKAGS KSAS RTHRGSHRKD PSLPAASSSS SSSKRGKKMC
521SDGEKAEKRS IAGIDQWLEV FCEQEEKWVC VDCVHGVVGQ
561PLTCYK YAT KPMTYVVGID SDGWVRDVTQ RYDPVWMTVT
601RKCRVDAEWW AETLRPYQSP FMDREKKEDL EFQAKHMDQP
641LPTAIGL YK NHPLYALKRH LLKYEAIYPE TAAILGYCRG
681EAVYSRDCVH TLHSRDTWLK KARVVRLGEV PYKMVKGFSN
721RARKARLA E PQLREENDLG LFGYWQTEEY QPPVAVDGKV
761PRNEFGNVYL FLPSMMPIGC VQLNLPNLHR VARKLDIDCV
801QAITGFDFH GGYSHPVTDG YIVCEEFKDV LLTAWENEQA
841VIERKEKEKK EKRALGNWKL LAKGLLIRER LKRRYGPKSE
881AAAPHTDAGG GLSSDEEEG TSSQAEAARI LAASWPQNRE
921DEEKQKLKGG PKKTKREKKA AASHLFPFEQ L
Structure predicted by AlphaFold DB(UniProt: Q01831). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of XPC:           Showing partial SNPs
rs1870134       rs2607735       rs2607772       rs2607775       rs2733539       rs3731053       rs3731054       rs3731055       rs3731056       rs3731058       rs7641448       rs11922012       rs13083929       rs34014908       rs36014499       rs36208720       rs36208721      

Tissue expression of XPC:    [UniProt]

Gene expression across tissues
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
GATGACCTCAGGGACTTTCC
60
CATTGCTGTCTTCATTCATGGT
60
GGTCTACTCCAGGGATTGTG
60
TACTTCTCCAAGCCTCACC
59
GATGACCTCAGGGACTTTCC
60
CATTGCTGTCTTCATTCATGGT
60
GAACCTGCCCAATCTACAC
58
TGTATCCATCAGTCACGGG
59
AGTTTGAGACATATCTTCGGAG
57
AGAGAAGGTGAACCTTGTG
57
GAAGAGGTTGAAGAACTTAGTGAG
59
CACAGGCAGAAGAGATCGA
59
TTACTGATTCTCCGGGCTC
59
AAGGTTTCTTTCCCTTTGCTG
59
GGAAGAGGTTGAAGAACTTAGTG
59
ACAGGCAGAAGAGATCGAG
59
GGGCTACCATGAATGAAGAC
58
GCTCACTAAGTTCTTCAACCT
58
CTTACTGATTCTCCGGGCT
59
AGGTTTCTTTCCCTTTGCTG
59
Transcription Factors
Target Gene
Interaction Type
PubMed References
BRCA1
XPC
Unknown
CREB1
XPC
Unknown
HIF1A
XPC
Activation
SIRT1
XPC
Repression
SP1
XPC
Unknown
TP53
XPC
Unknown
TP63
XPC
Unknown
XPC
CASP2
Repression
XPC
CPD
Unknown
XPC
KIN
Activation

Subcellular localization of XPC (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for XPC:

GO ID
Protein
Source DB
GO:0005634
E7EUB5 (UniProtKB)
IDA
GO:0005730
E7EUB5 (UniProtKB)
IDA
GO:0005886
E7EUB5 (UniProtKB)
IDA
GO:0000111
Q01831 (UniProtKB)
IBA
GO:0000404
Q01831 (UniProtKB)
TAS
GO:0000405
Q01831 (UniProtKB)
TAS
GO:0000715
Q01831 (UniProtKB)
IDA
GO:0000715
Q01831 (UniProtKB)
IDA
GO:0000715
Q01831 (UniProtKB)
TAS
GO:0000717
Q01831 (UniProtKB)
TAS
GO:0003684
Q01831 (UniProtKB)
IDA
GO:0003684
Q01831 (UniProtKB)
IDA
GO:0003697
Q01831 (UniProtKB)
IDA
GO:0005515
Q01831 (UniProtKB)
IPI
GO:0005515
Q01831 (UniProtKB)
IPI
GO:0005515
Q01831 (UniProtKB)
IPI
GO:0005515
Q01831 (UniProtKB)
IPI
GO:0005515
Q01831 (UniProtKB)
IPI
GO:0005515
Q01831 (UniProtKB)
IPI
GO:0005515
Q01831 (UniProtKB)
IPI
GO:0005634
Q01831 (UniProtKB)
IDA
GO:0005634
Q01831 (UniProtKB)
IDA
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005654
Q01831 (UniProtKB)
TAS
GO:0005730
Q01831 (UniProtKB)
IDA
GO:0005737
Q01831 (UniProtKB)
IDA
GO:0005886
Q01831 (UniProtKB)
IDA
GO:0006281
Q01831 (UniProtKB)
TAS
GO:0006289
Q01831 (UniProtKB)
IDA
GO:0006289
Q01831 (UniProtKB)
IDA
GO:0006294
Q01831 (UniProtKB)
TAS
GO:0006294
Q01831 (UniProtKB)
TAS
GO:0006298
Q01831 (UniProtKB)
IBA
GO:0010224
Q01831 (UniProtKB)
IEA
GO:0010996
Q01831 (UniProtKB)
IEA
GO:0016925
Q01831 (UniProtKB)
TAS
GO:0031573
Q01831 (UniProtKB)
IEA
GO:0042493
Q01831 (UniProtKB)
IEA
GO:0070062
Q01831 (UniProtKB)
IDA
GO:0070911
Q01831 (UniProtKB)
TAS
GO:0070914
Q01831 (UniProtKB)
IDA
GO:0071942
Q01831 (UniProtKB)
IDA
GO:1901990
Q01831 (UniProtKB)
IMP

microRNAs potentially regulating XPC:     

String
BioGrid
IntAct
mentha
MINT
Reactome
Loading…
Interacting Gene Interaction Source/Score
Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source
XERODERMA PIGMENTOSUM, COMPLEMENTATION GROUP C 0.568957582 34 15 BeFree_CLINVAR_CTD_human_MGD_ORPHANET_UNIPROT
Lung Neoplasms 0.133535875 7 0 BeFree_CTD_human_GAD_LHGDN
Chromosome Aberrations 0.127101096 4 0 CTD_human_GAD
Adenocarcinoma of lung (disorder) 0.120542884 2 0 BeFree_CTD_human
Micronuclei, Chromosome-Defective 0.12 1 0 CTD_human
Amino Acid Metabolism, Inborn Errors 0.12 1 0 CTD_human
Autistic Disorder 0.12 1 0 CTD_human
Carcinoma of lung 0.084071628 15 11 BeFree_MGD
Malignant neoplasm of lung 0.044311172 24 11 BeFree_GAD
Malignant neoplasm of urinary bladder 0.031737631 27 7 BeFree_GAD
Xanthatin-13-(Pyrrolidine-2-Carboxylic Acid), a Sesquiterpene Lactone Isolated From Burdock Leaf, Attenuated Aβ25-35 Toxicity and Memory Deficits in a Pharmacological Mouse Model of Alzheimer's Disease.
Barry-Simonnet C, Crouzier L, Moujellil-Legagneur T, Chaieb-Errass H, Idres YA, Ferrare K, Rolland M, Cazals G, Poucheret P, Maurice T, Tousch D Phytother Res IF: 8.1 2026-05-00
XPC and global genome nucleotide excision repair are essential for telomere stability after UVC-induced DNA damage in human cells.
Detwiler A, Barsouk A, De Rosa M, Pecen T, Bose A, Adisa F, Orenstein X, Sanford S, Fouquerel E, Barnes R, Nagel ZD, Opresko PL DNA Repair (Amst) IF: 3.2 2026-07-00
Vitamin D Supplementation Modulates Base Excision Repair (BER) Machinery in Systemic Sclerosis: A Prospective Longitudinal Study.
Dal-Bekar NE, Birdogan A, Islekel GH, Birlik AM, Akdogan G Biochem Genet IF: 1.9 2026-06-08
Canonical autophagy remains inactive in induced pluripotent stem cells and neuronal progenitor cells following DNA damage induced by BPDE or etoposide.
Akgün S, Naren P, Lenz T, Zink A, Krings KS, Wesselborg S, Mendiburo MJ, Prigione A, Stühler K, Stork B Sci Rep IF: 4.9 2026-06-08
TIP60 promotes chemoresistance by limiting intracellular platinum accumulation and enhancing removal of cisplatin-DNA adducts.
Hira A, Craig MP, McLaughlin C, Zhang J, Turchi JJ, Kemp MG, Nahhas RW, Kadakia MP J Biol Chem IF: 3.9 2026-07-16
XPC Deficiency Activate Cisplatin-Mediated Autophagy in Bladder Cancer by Limiting Novel PHRF1-Mediated Ubiquitination of the p53 Protein.
Zhao B, Huang Y, Shi J, Zhou X, Fagman JB, Wang L, Liu S, Wang W, Liu Y, Chen Z, Yang J Adv Sci (Weinh) IF: 14.1 2026-01-00

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