WNT1 (Wnt family member 1)

symbol
WNT1
locus group
protein-coding gene
location
12q13.12
gene_family
Wingless-type MMTV integration site family|Endogenous ligands
alias symbol
-
alias name
None
entrez id
7471
ensembl gene id
ENSG00000125084
ucsc gene id
uc001rsu.4
refseq accession
NM_005430
hgnc_id
HGNC:12774
approved reserved
2001-06-22
12q13.12
ChineseEnglish

WNT1, a member of the WNT gene family comprising nineteen secreted glycoproteins, encodes a canonical ligand that plays a pivotal role in embryonic development, tissue homeostasis, and cellular fate determination. As a classic activator of the WNT/β-catenin signaling pathway, the WNT1 protein binds to Frizzled receptors and LRP5/6 co-receptors on the cell surface, thereby inhibiting the degradation of β-catenin and facilitating its nuclear translocation to drive the transcription of target genes such as MYC and CCND1. This signaling cascade is critical for orchestrating processes including midbrain development, osteoblast differentiation, and mammary gland morphogenesis, all of which rely on the conserved cysteine residues within WNT proteins that enable proper ligand folding and secretion. The gene exhibits significant tissue-specific expression in the nervous system, skeletal tissues, and breast, where it functions via autocrine or paracrine mechanisms to regulate cell proliferation and differentiation. Disruption of WNT1 function has profound clinical implications; loss-of-function mutations are associated with early-onset osteoporosis characterized by reduced bone density and increased fracture susceptibility, as well as pediatric neurodevelopmental disorders such as cerebellar malformations. Conversely, aberrant overexpression or constitutive activation of the WNT pathway by WNT1 can drive oncogenesis by promoting uncontrolled cell proliferation, contributing to the development of malignancies such as breast cancer and medulloblastoma. Thus, WNT1 serves as a key regulator of developmental patterning and adult tissue regeneration, maintaining a delicate balance where its dysregulation leads to either structural defects in bone and neural tissues or the initiation of cancerous growth.

Nucleotide sequence of WNT1:[NCBI]
Loading Gene Browser...
Protein Sequence
1MGLWALLPGW VSATLLLALA ALPAALAANS SGRWWGIVNV
41ASSTNLLTDS KSLQLVLEPS LQLLSRKQRR LIRQNPGILH
81 SVSGGLQSA VRECKWQFRN RRWNCPTAPG PHLFGKIVNR
121GCRETAFIFA ITSAGVTHSV ARSCSEGSIE SCTCDYRRRG
161P GGPDWHWG GCSDNIDFGR LFGREFVDSG EKGRDLRFLM
201NLHNNEAGRT TVFSEMRQEC KCHGMSGSCT VRTCWMRLPT
241LR AVGDVLR DRFDGASRVL YGNRGSNRAS RAELLRLEPE
281DPAHKPPSPH DLVYFEKSPN FCTYSGRLGT AGTAGRACNS
321SSP ALDGCE LLCCGRGHRT RTQRVTERCN CTFHWCCHVS
361CRNCTHTRVL HECL
Structure predicted by AlphaFold DB(UniProt: P04628). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of WNT1:           Showing partial SNPs
rs60255525       rs75357001       rs76398454       rs139820284       rs142431608       rs145960201       rs186599740       rs192744209       rs200992209       rs377285470       rs529452575       rs533402504       rs535023301       rs539709439       rs540615955       rs541943309       rs549499340      
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
GCGACAACATTGACTTCGG
60
GGAGAATACGGTCGTACGG
60
CGACAACATTGACTTCGGC
60
GGAGAATACGGTCGTACGG
60
GACAACATTGACTTCGGCC
60
GGAGAATACGGTCGTACGG
60

Subcellular localization of WNT1 (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for WNT1:

GO ID
Protein
Source DB
GO:0005102
A0A087WXR9 (UniProtKB)
IEA
GO:0005578
A0A087WXR9 (UniProtKB)
IEA
GO:0007275
A0A087WXR9 (UniProtKB)
IEA
GO:0016055
A0A087WXR9 (UniProtKB)
IEA
GO:0000578
P04628 (UniProtKB)
ISS
GO:0001658
P04628 (UniProtKB)
IEA
GO:0001934
P04628 (UniProtKB)
IEA
GO:0005109
P04628 (UniProtKB)
IBA
GO:0005109
P04628 (UniProtKB)
IC
GO:0005109
P04628 (UniProtKB)
NAS
GO:0005125
P04628 (UniProtKB)
ISS
GO:0005576
P04628 (UniProtKB)
TAS
GO:0005576
P04628 (UniProtKB)
TAS
GO:0005576
P04628 (UniProtKB)
TAS
GO:0005576
P04628 (UniProtKB)
TAS
GO:0005576
P04628 (UniProtKB)
TAS
GO:0005576
P04628 (UniProtKB)
TAS
GO:0005578
P04628 (UniProtKB)
IEA
GO:0005615
P04628 (UniProtKB)
IBA
GO:0005737
P04628 (UniProtKB)
IDA
GO:0005737
P04628 (UniProtKB)
IDA
GO:0005788
P04628 (UniProtKB)
TAS
GO:0005796
P04628 (UniProtKB)
TAS
GO:0005796
P04628 (UniProtKB)
TAS
GO:0005796
P04628 (UniProtKB)
TAS
GO:0005886
P04628 (UniProtKB)
TAS
GO:0005886
P04628 (UniProtKB)
TAS
GO:0005886
P04628 (UniProtKB)
TAS
GO:0007267
P04628 (UniProtKB)
ISS
GO:0007520
P04628 (UniProtKB)
IEA
GO:0008284
P04628 (UniProtKB)
IDA
GO:0008284
P04628 (UniProtKB)
IMP
GO:0009611
P04628 (UniProtKB)
IEP
GO:0009986
P04628 (UniProtKB)
IEA
GO:0010592
P04628 (UniProtKB)
IMP
GO:0010812
P04628 (UniProtKB)
IDA
GO:0016015
P04628 (UniProtKB)
TAS
GO:0016055
P04628 (UniProtKB)
IDA
GO:0016055
P04628 (UniProtKB)
TAS
GO:0019904
P04628 (UniProtKB)
IEA
GO:0021527
P04628 (UniProtKB)
IEA
GO:0021536
P04628 (UniProtKB)
IEA
GO:0021551
P04628 (UniProtKB)
ISS
GO:0021588
P04628 (UniProtKB)
ISS
GO:0021797
P04628 (UniProtKB)
IEA
GO:0022004
P04628 (UniProtKB)
IEA
GO:0022408
P04628 (UniProtKB)
IMP
GO:0030512
P04628 (UniProtKB)
IEA
GO:0030514
P04628 (UniProtKB)
IMP
GO:0030579
P04628 (UniProtKB)
IEA
GO:0030666
P04628 (UniProtKB)
TAS
GO:0030666
P04628 (UniProtKB)
TAS
GO:0030901
P04628 (UniProtKB)
ISS
GO:0031100
P04628 (UniProtKB)
IEA
GO:0033077
P04628 (UniProtKB)
IEA
GO:0033278
P04628 (UniProtKB)
IEA
GO:0042472
P04628 (UniProtKB)
IEA
GO:0042770
P04628 (UniProtKB)
IDA
GO:0043568
P04628 (UniProtKB)
IDA
GO:0044212
P04628 (UniProtKB)
IDA
GO:0044336
P04628 (UniProtKB)
IMP
GO:0045165
P04628 (UniProtKB)
IBA
GO:0045599
P04628 (UniProtKB)
ISS
GO:0045747
P04628 (UniProtKB)
IDA
GO:0045893
P04628 (UniProtKB)
ISS
GO:0045893
P04628 (UniProtKB)
IDA
GO:0045893
P04628 (UniProtKB)
IMP
GO:0045944
P04628 (UniProtKB)
IEA
GO:0048018
P04628 (UniProtKB)
IC
GO:0048018
P04628 (UniProtKB)
NAS
GO:0048146
P04628 (UniProtKB)
IMP
GO:0048664
P04628 (UniProtKB)
IEA
GO:0048666
P04628 (UniProtKB)
IEA
GO:0051091
P04628 (UniProtKB)
ISS
GO:0060061
P04628 (UniProtKB)
ISS
GO:0060070
P04628 (UniProtKB)
IMP
GO:0060070
P04628 (UniProtKB)
IMP
GO:0060070
P04628 (UniProtKB)
NAS
GO:0060070
P04628 (UniProtKB)
TAS
GO:0060071
P04628 (UniProtKB)
TAS
GO:0060348
P04628 (UniProtKB)
IMP
GO:0061184
P04628 (UniProtKB)
IDA
GO:0070062
P04628 (UniProtKB)
TAS
GO:0070365
P04628 (UniProtKB)
IEA
GO:0071375
P04628 (UniProtKB)
IEA
GO:0071425
P04628 (UniProtKB)
IEA
GO:0090263
P04628 (UniProtKB)
IEA
GO:0090344
P04628 (UniProtKB)
IDA
GO:1904886
P04628 (UniProtKB)
TAS
GO:1904953
P04628 (UniProtKB)
NAS
GO:1904953
P04628 (UniProtKB)
TAS
GO:1904954
P04628 (UniProtKB)
TAS
GO:1990403
P04628 (UniProtKB)
IEA
GO:2000059
P04628 (UniProtKB)
IEA

microRNAs potentially regulating WNT1:     

String
BioGrid
mentha
Reactome
Loading…
Interacting Gene Interaction Source/Score
Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source
OSTEOGENESIS IMPERFECTA, TYPE XV 0.24 2 7 CLINVAR_UNIPROT
Osteoporosis 0.120542884 4 0 BeFree_UNIPROT
Osteogenesis imperfecta type III (disorder) 0.120271442 1 0 BeFree_ORPHANET
Osteogenesis imperfecta type IV (disorder) 0.120271442 1 0 BeFree_ORPHANET
Malignant neoplasm of breast 0.083528744 13 0 BeFree_MGD
Mammary Neoplasms 0.010877538 22 0 BeFree_LHGDN
Liver carcinoma 0.00408156 6 0 BeFree_LHGDN
Neurodegenerative Disorders 0.002995792 2 0 BeFree_LHGDN
Liver neoplasms 0.002995792 2 0 BeFree_LHGDN
Breast Carcinoma 0.002985861 11 0 BeFree
WISP1 is the stromal-secreting oncoprotein via paracrine downregulation of NDRG1, KAI1, and Maspin in human bladder cancer cells.
Chen ST, Chang KS, Hou CP, Lin WY, Hsu SY, Sung HC, Feng TH, Lin YH, Juang HH Transl Oncol IF: 4.9 2026-03-00
Exploring the cardioprotective potential of Hyphaene Thebaica L. extract, Bacillus-derived proteases, and vitamin E against doxorubicin-induced cardiotoxicity: Insights into mechanisms and Wnt/β-catenin/GSK3β signaling modulation.
Azzam SM, Salem GEM, Abdel Rahman AAS, Abdel Khalek MR, Darwish IA, Tongdeesoontorn W, Aleskandarany MA, Darwish A Int J Biol Macromol IF: 8.7 2026-02-00
NR6A1 is essential for neural crest cell specification, formation and survival.
Moore Zajic EL, Muñoz WA, Dennis JF, Bhatt S, Sakai D, Achilleos A, Zhao R, Lamb M, Price AJ, Seidel C, Tiana M, Barral A, Clawson D, Manzanares M, Trainor PA Nat Commun IF: 12.124 2026-01-29
Engineered cyclic peptide targeting ITGA5 disrupts tumor-stroma interaction to overcome desmoplasia and resistance in pancreatic ductal adenocarcinoma.
Mardhian DF, Pednekar KP, Hemdan AG, Kuninty PR, Karim SA, de Winter S, Metselaar JM, Morton JP, Prakash J Acta Pharm Sin B IF: 14.6 2026-01-00
Antibiotics treatment promotes squamocolumnar junction tumor progression via tumor immune evasion in K19-Wnt1/C2mE mice fed high-fat diet and acidic bile salts.
Ogasawara K, Uno K, Tamahara T, Asano N, Sudo K, Kusano K, Tanabe M, Kaise Y, Shindo T, Shimoyama Y, Kanno T, Koike T, Shimizu R, Masamune A Am J Physiol Gastrointest Liver Physiol IF: 3.0 2026-07-01
Wnt6 and Wnt10 regulate spot marking formation in Bombyx mori larvae.
Ding X, Zheng L, Liu J, Chen K, Han M, Hu H, Tang Y, Tong X, Dai F Insect Sci IF: 3.7 2026-06-00
Identification of rare genetic variants in familial forms and unrelated cases of bisphosphonates-associated atypical femur fracture.
Michou L, Brown JP, Champagne L, Vallée M, Fournier F, Gagnon E, Droit A, Morin SN Joint Bone Spine IF: 5.0 2026-03-00

Loading comments...

Log in to post comments Log In Sign Up

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]