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PMID: 10330125 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

An automated sample preparation system for large-scale DNA sequencing.

Genome research ·Vol. 9 ·No. 5 ·1999-05-00 ·Pages 457-62

Marziali A, Willis TD, Federspiel NA, Davis RW

Abstract

Recent advances in DNA sequencing technologies, both in the form of high lane-density gels and automated capillary systems, will lead to an increased requirement for sample preparation systems that operate at low cost and high throughput. As part of the development of a fully automated sequencing system, we have developed an automated subsystem capable of producing 10,000 sequence-ready ssDNA templates per day from libraries of M13 plaques at a cost of $0.29 per sample. This Front End has been in high throughput operation since June, 1997 and has produced > 400,000 high-quality DNA templates.

MeSH Terms
DNA/isolation & purification Sequence Analysis, DNA/economics,instrumentation,methods
Chemicals
DNA
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Marziali A
Stanford DNA Sequencing and Technology Center, Palo Alto, California 94304, USA. [email protected]
Willis T D
Federspiel N A
Davis R W
References (4)
4 references, click to expand
  1. A simple and rapid preparation of M13 sequencing templates for manual and automated dideoxy sequencing.
    Nucleic Acids Res. 1987 Jul 24;15(14):5507-16 PMID: 3615197
  2. A sample purification method for rugged and high-performance DNA sequencing by capillary electrophoresis using replaceable polymer solutions. A. Development of the cleanup protocol.
    Anal Chem. 1998 Apr 15;70(8):1516-27 PMID: 9569761
  3. Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
    Genome Res. 1998 Mar;8(3):175-85 PMID: 9521921
  4. A magnetic attraction to high-throughput genomics.
    Science. 1997 Jun 20;276(5320):1887-9 PMID: 9206843
Article Info
Journal
Genome research
Abbr.
Genome Res
ISSN
1088-9051
Published
1999-05-00
Pages
457-62
Language
English
Region
United States
NLM ID
9518021
PMCID
PMC310765
Subset
IM
Grants
NHGRI NIH HHS · P01 HG000205 · United States
NHGRI NIH HHS · P01 HG-00205 · United States
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