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PMID: 10398683 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

The control of trunk Hox specificity and activity by Extradenticle.

Genes & development ·Vol. 13 ·No. 13 ·1999-07-01 ·Pages 1704-16

Ryoo HD, Mann RS

Abstract

We characterize a 37-bp element (fkh[250]) derived from the fork head (fkh) gene, a natural target of the Hox gene Sex combs reduced (Scr). In vitro, Scr cooperatively binds to this DNA with the Hox cofactor Extradenticle (Exd), and the activation of this enhancer in vivo requires Scr and exd. Other Hox/Exd heterodimers do not activate this element in vivo and do not bind this element with high affinity in vitro. The amino-terminal arm of the Scr homeodomain is crucial for the specific activation of this element in vivo. By mutating two base pairs within this element, we can convert the Scr/Exd-binding site to a Hox/Exd consensus site that binds several different Hox/Exd heterodimers. This element, fkh[250(con)], is activated by Scr, Antennapedia (Antp), and Ultrabithorax (Ubx) but repressed by abdominal-A (abd-A). We also show that Scr and Exd are only able to activate the fkh[250] element during the early stages of embryogenesis because, by stage 11, Scr negatively regulates the gene homothorax (hth), which is required for the nuclear localization of Exd. These results suggest that Exd is a specificity cofactor for the trunk Hox genes, and that the control of Exd subcellular localization is a mechanism to regulate Hox activity during development.

MeSH Terms
Abdomen/embryology Animals Antennapedia Homeodomain Protein DNA-Binding Proteins/physiology Dimerization Drosophila Proteins Drosophila melanogaster/embryology,genetics Embryo, Nonmammalian/ultrastructure Enhancer Elements, Genetic Forkhead Transcription Factors Gene Expression Regulation, Developmental Genes, Homeobox Homeodomain Proteins/physiology Insect Proteins/genetics,physiology Morphogenesis/genetics Nuclear Proteins/genetics,physiology Repressor Proteins/genetics,physiology Subcellular Fractions/chemistry Transcription Factors/genetics,physiology
Chemicals
Antennapedia Homeodomain Protein Antp protein, Drosophila DNA-Binding Proteins Drosophila Proteins Forkhead Transcription Factors Homeodomain Proteins Insect Proteins Nuclear Proteins Repressor Proteins Scr protein, Drosophila Transcription Factors Ubx protein, Drosophila exd protein, Drosophila hth protein, Drosophila abd-A protein, Drosophila
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Ryoo H D
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.
Mann R S
References (66)
66 references, click to expand
  1. Drosophila Hox complex downstream targets and the function of homeotic genes.
    Bioessays. 1997 May;19(5):379-88 PMID: 9174403
  2. New motif in PBX genes.
    Nat Genet. 1992 Aug;1(5):319-20 PMID: 1363814
  3. Structural basis of Hox specificity.
    Nat Struct Biol. 1999 Apr;6(4):297-300 PMID: 10201389
  4. Comparison of X-ray and NMR structures for the Antennapedia homeodomain-DNA complex.
    Nat Struct Biol. 1998 Aug;5(8):692-7 PMID: 9699632
  5. Targeted gene expression as a means of altering cell fates and generating dominant phenotypes.
    Development. 1993 Jun;118(2):401-15 PMID: 8223268
  6. Structure of the even-skipped homeodomain complexed to AT-rich DNA: new perspectives on homeodomain specificity.
    EMBO J. 1995 Dec 15;14(24):6280-91 PMID: 8557047
  7. Generation of multiple antagonistic domains along the proximodistal axis during Drosophila leg development.
    Development. 1998 Oct;125(19):3821-30 PMID: 9729490
  8. Nuclear import of the homeodomain protein extradenticle in response to Wg and Dpp signalling.
    Nature. 1996 Oct 17;383(6601):630-3 PMID: 8857540
  9. The Homothorax homeoprotein activates the nuclear localization of another homeoprotein, extradenticle, and suppresses eye development in Drosophila.
    Genes Dev. 1998 Feb 1;12(3):435-46 PMID: 9450936
  10. Functional differences between HOX proteins conferred by two residues in the homeodomain N-terminal arm.
    Mol Cell Biol. 1994 Aug;14(8):5066-75 PMID: 7913516
  11. abdA expression in Drosophila embryos.
    Genes Dev. 1990 Sep;4(9):1573-87 PMID: 1979297
  12. Eve and ftz regulate a wide array of genes in blastoderm embryos: the selector homeoproteins directly or indirectly regulate most genes in Drosophila.
    Development. 1998 Nov;125(22):4471-82 PMID: 9778506
  13. Control of Drosophila adult pattern by extradenticle.
    Development. 1995 Jul;121(7):2117-25 PMID: 7635057
  14. Regulation of segmentation and segmental identity by Drosophila homeoproteins: the role of DNA binding in functional activity and specificity.
    Development. 1997 Nov;124(22):4425-33 PMID: 9409661
  15. The segment identity functions of Ultrabithorax are contained within its homeo domain and carboxy-terminal sequences.
    Genes Dev. 1993 May;7(5):796-811 PMID: 8098307
  16. A structural model for a homeotic protein-extradenticle-DNA complex accounts for the choice of HOX protein in the heterodimer.
    Proc Natl Acad Sci U S A. 1996 May 28;93(11):5223-8 PMID: 8643557
  17. A role for phosphorylation by casein kinase II in modulating Antennapedia activity in Drosophila.
    Genes Dev. 1997 May 15;11(10):1327-40 PMID: 9171376
  18. Extra specificity from extradenticle: the partnership between HOX and PBX/EXD homeodomain proteins.
    Trends Genet. 1996 Jul;12(7):258-62 PMID: 8763497
  19. Nucleocytoplasmic localisation of extradenticle protein is spatially regulated throughout development in Drosophila.
    Development. 1997 Feb;124(3):741-7 PMID: 9043089
  20. Organogenesis in Drosophila melanogaster: embryonic salivary gland determination is controlled by homeotic and dorsoventral patterning genes.
    Development. 1992 Jan;114(1):49-57 PMID: 1349523
  21. Mutations in the Drosophila gene extradenticle affect the way specific homeo domain proteins regulate segmental identity.
    Genes Dev. 1990 Jul;4(7):1209-23 PMID: 1976570
  22. Pbx modulation of Hox homeodomain amino-terminal arms establishes different DNA-binding specificities across the Hox locus.
    Mol Cell Biol. 1996 Apr;16(4):1734-45 PMID: 8657149
  23. Homeobox genes and axial patterning.
    Cell. 1992 Jan 24;68(2):283-302 PMID: 1346368
  24. Genes controlling segmental specification in the Drosophila thorax.
    Proc Natl Acad Sci U S A. 1982 Dec;79(23):7380-4 PMID: 6961417
  25. The specificities of Sex combs reduced and Antennapedia are defined by a distinct portion of each protein that includes the homeodomain.
    Cell. 1990 Sep 21;62(6):1087-103 PMID: 1976044
  26. Distribution of Ultrabithorax proteins in Drosophila.
    EMBO J. 1985 Aug;4(8):2035-43 PMID: 16453630
  27. Two homeo domain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos.
    Genes Dev. 1994 Jul 15;8(14):1678-92 PMID: 7958848
  28. Synergistic activation of a Drosophila enhancer by HOM/EXD and DPP signaling.
    EMBO J. 1997 Dec 15;16(24):7402-10 PMID: 9405369
  29. Mapping functional specificity in the Dfd and Ubx homeo domains.
    Genes Dev. 1992 Jun;6(6):1071-81 PMID: 1350559
  30. Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex.
    Nature. 1999 Feb 25;397(6721):714-9 PMID: 10067897
  31. Segmental expression of Hoxb-1 is controlled by a highly conserved autoregulatory loop dependent upon exd/pbx.
    Cell. 1995 Jun 30;81(7):1031-42 PMID: 7600572
  32. extradenticle, a regulator of homeotic gene activity, is a homolog of the homeobox-containing human proto-oncogene pbx1.
    Cell. 1993 Sep 24;74(6):1101-12 PMID: 8104703
  33. Pbx raises the DNA binding specificity but not the selectivity of antennapedia Hox proteins.
    Mol Cell Biol. 1997 Aug;17(8):4696-706 PMID: 9234726
  34. A model for extradenticle function as a switch that changes HOX proteins from repressors to activators.
    EMBO J. 1997 Apr 15;16(8):2032-42 PMID: 9155029
  35. Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions.
    Cell. 1990 Nov 2;63(3):579-90 PMID: 1977522
  36. Switching the in vivo specificity of a minimal Hox-responsive element.
    Development. 1997 May;124(10):2007-14 PMID: 9169847
  37. Both Pbx1 and E2A-Pbx1 bind the DNA motif ATCAATCAA cooperatively with the products of multiple murine Hox genes, some of which are themselves oncogenes.
    Mol Cell Biol. 1995 Jul;15(7):3786-95 PMID: 7791786
  38. Genetic characterization of the role of the two HOX proteins, Proboscipedia and Sex Combs Reduced, in determination of adult antennal, tarsal, maxillary palp and proboscis identities in Drosophila melanogaster.
    Development. 1997 Dec;124(24):5049-62 PMID: 9362475
  39. Regulation and formation of the Drosophila salivary glands.
    Ann N Y Acad Sci. 1998 Apr 15;842:55-69 PMID: 9599294
  40. Control of antennal versus leg development in Drosophila.
    Nature. 1998 Apr 16;392(6677):723-6 PMID: 9565034
  41. A molecular gradient in early Drosophila embryos and its role in specifying the body pattern.
    Nature. 1986 Dec 11-17;324(6097):537-45 PMID: 2878369
  42. Functional and regulatory interactions between Hox and extradenticle genes.
    Genes Dev. 1998 Jan 15;12(2):261-73 PMID: 9436985
  43. Salivary duct determination in Drosophila: roles of the EGF receptor signalling pathway and the transcription factors fork head and trachealess.
    Development. 1996 Jun;122(6):1909-17 PMID: 8674429
  44. Distinct HOX N-terminal arm residues are responsible for specificity of DNA recognition by HOX monomers and HOX.PBX heterodimers.
    J Biol Chem. 1997 Mar 28;272(13):8635-43 PMID: 9079695
  45. Nuclear translocation of extradenticle requires homothorax, which encodes an extradenticle-related homeodomain protein.
    Cell. 1997 Oct 17;91(2):171-83 PMID: 9346235
  46. Structure of a HoxB1-Pbx1 heterodimer bound to DNA: role of the hexapeptide and a fourth homeodomain helix in complex formation.
    Cell. 1999 Feb 19;96(4):587-97 PMID: 10052460
  47. Regulation of the Ultrabithorax gene of Drosophila by other bithorax complex genes.
    Cell. 1985 Dec;43(2 Pt 1):507-19 PMID: 3935322
  48. Control of the nuclear localization of Extradenticle by competing nuclear import and export signals.
    Genes Dev. 1999 Apr 15;13(8):935-45 PMID: 10215621
  49. Hox homeodomain proteins exhibit selective complex stabilities with Pbx and DNA.
    Nucleic Acids Res. 1996 Mar 1;24(5):898-906 PMID: 8600458
  50. Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions.
    Cell. 1991 Nov 1;67(3):517-28 PMID: 1682054
  51. Functional specificity of the Antennapedia homeodomain.
    Proc Natl Acad Sci U S A. 1993 Jul 1;90(13):6360-4 PMID: 8101003
  52. A comparison of in vivo and in vitro DNA-binding specificities suggests a new model for homeoprotein DNA binding in Drosophila embryos.
    EMBO J. 1999 Mar 15;18(6):1598-608 PMID: 10075930
  53. An extradenticle-induced conformational change in a HOX protein overcomes an inhibitory function of the conserved hexapeptide motif.
    EMBO J. 1996 May 15;15(10):2476-87 PMID: 8665855
  54. The caudal gene product is a direct activator of fushi tarazu transcription during Drosophila embryogenesis.
    Nature. 1989 Sep 28;341(6240):340-3 PMID: 2571934
  55. The pentapeptide motif of Hox proteins is required for cooperative DNA binding with Pbx1, physically contacts Pbx1, and enhances DNA binding by Pbx1.
    Mol Cell Biol. 1995 Oct;15(10):5811-9 PMID: 7565734
  56. The homeotic gene Sex combs reduced of Drosophila melanogaster is differentially regulated in the embryonic and imaginal stages of development.
    Genetics. 1991 Oct;129(2):443-61 PMID: 1683847
  57. Double and triple mutant combinations of bithorax complex of Drosophila.
    EMBO J. 1987 Oct;6(10):3103-9 PMID: 14650432
  58. extradenticle determines segmental identities throughout Drosophila development.
    Development. 1995 Nov;121(11):3663-73 PMID: 8582279
  59. A homeodomain substitution changes the regulatory specificity of the deformed protein in Drosophila embryos.
    Cell. 1989 Nov 3;59(3):563-71 PMID: 2572328
  60. Functional dissection of Ultrabithorax proteins in D. melanogaster.
    Cell. 1990 Feb 23;60(4):597-610 PMID: 2105847
  61. Activity regulation of a Hox protein and a role for the homeodomain in inhibiting transcriptional activation.
    EMBO J. 1999 Jan 4;18(1):198-211 PMID: 9878063
  62. The DNA binding specificity of Ultrabithorax is modulated by cooperative interactions with extradenticle, another homeoprotein.
    Cell. 1994 Aug 26;78(4):603-15 PMID: 7915199
  63. Ectopic expression and function of the Antp and Scr homeotic genes: the N terminus of the homeodomain is critical to functional specificity.
    Development. 1993 Jun;118(2):339-52 PMID: 7900989
  64. The degree of variation in DNA sequence recognition among four Drosophila homeotic proteins.
    EMBO J. 1994 Aug 1;13(15):3551-60 PMID: 7914870
  65. Expression of the caudal gene in the germ line of Drosophila: formation of an RNA and protein gradient during early embryogenesis.
    Cell. 1987 Feb 13;48(3):465-78 PMID: 2433048
  66. Coordinate regulation of downstream genes by extradenticle and the homeotic selector proteins.
    EMBO J. 1994 Aug 1;13(15):3561-9 PMID: 7914871
Article Info
Journal
Genes & development
Abbr.
Genes Dev
ISSN
0890-9369
Published
1999-07-01
Pages
1704-16
Language
English
Region
United States
NLM ID
8711660
PMCID
PMC316852
Subset
IM
Grants
NIGMS NIH HHS · R01 GM054510 · United States
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