Home LiteratureArticle Details
PMID: 106392 Published · ppublish English Journal Article

Crystallographic and kinetic investigations of the covalent complex formed by a specific tetrapeptide aldehyde and the serine protease from Streptomyces griseus.

Brayer GD, Delbaere LT, James MN, Bauer CA, Thompson RC

Abstract

X-ray crystallographic data show that a specific tetrapeptide aldehyde inhibitor (N-acetylprolylalanylprolylphenylalaninal) forms a stable, covalent, tetrahedral addition complex with the serine protease, SGPA, from Streptomyces griseus. Earlier proposals, based on kinetic measurements, for the covalent nature of such linkages are confirmed, and the difference electron density map of this aldehyde inhibitor indicates that a major conformational change of the histidyl-57 side chain occurs on inhibitor binding.

MeSH Terms
Aldehydes/pharmacology Binding Sites Crystallography Endopeptidases Kinetics Oligopeptides/pharmacology Protease Inhibitors Protein Binding Protein Conformation Serine Streptomyces griseus/enzymology Structure-Activity Relationship
Chemicals
Aldehydes Oligopeptides Protease Inhibitors Serine Endopeptidases
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Brayer G D
Delbaere L T
James M N
Bauer C A
Thompson R C
References (31)
31 references, click to expand
  1. Structures and activities of protease inhibitors of microbial origin.
    Methods Enzymol. 1976;45:678-95 PMID: 1012021
  2. Molecular structure of crystalline Streptomyces griseus protease A at 2.8 A resolution. I. Crystallization, data collection and structural analysis.
    J Mol Biol. 1978 Sep 5;124(1):243-59 PMID: 101673
  3. Molecular structure of crystalline Streptomyces griseus protease A at 2.8 A resolution. II. Molecular conformation, comparison with alpha-chymotrypsin and active-site geometry.
    J Mol Biol. 1978 Sep 5;124(1):261-83 PMID: 101674
  4. Tertiary structural differences between microbial serine proteases and pancreatic serine enzymes.
    Nature. 1975 Oct 30;257(5529):758-63 PMID: 1186854
  5. Polypeptide halomethyl ketones bind to serine proteases as analogs of the tetrahedral intermediate. X-ray crystallographic comparison of lysine- and phenylalanine-polypeptide chloromethyl ketone-inhibited subtilisin.
    J Biol Chem. 1976 Feb 25;251(4):1097-103 PMID: 1249069
  6. The determination of enzyme inhibitor constants.
    Biochem J. 1953 Aug;55(1):170-1 PMID: 13093635
  7. Use of the pH-stat in kinetic studies of reactions whose products are capable of functioning as buffers.
    Biochemistry. 1962 Mar;1:238-43 PMID: 14460828
  8. The binding of a non-specific "transition state analogue" to alpha-chymotrypsin.
    FEBS Lett. 1975 Jan 15;50(1):47-9 PMID: 234084
  9. The binding of specific and non-specific aldehyde substrate analogs to alpha-chymotrypsin.
    FEBS Lett. 1975 Aug 1;56(1):81-4 PMID: 239865
  10. Studies of the heterogeneity of Streptomyces griseus protease. Isolation and characterization of an alkaline serine protease from commercial pronase-P derived from Streptomyces griseus K1.
    Acta Chem Scand. 1973;27(9):3147-66 PMID: 4205061
  11. The 4.5 Angstrom resolution structure of a bacterial serine protease from Streptomyces griseus.
    Can J Biochem. 1974 Mar;52(3):208-20 PMID: 4208242
  12. Effect of pH on the catalytic activity of Streptomyces griseus protease 3.
    Eur J Biochem. 1974 Jun 15;45(2):469-72 PMID: 4211962
  13. Inhibition of Streptomyces griseus protease B by peptide chloromethyl ketones: partial mapping of the binding site and identification of the reactive residue.
    FEBS Lett. 1974 Jul 1;43(1):81-5 PMID: 4212092
  14. The amino acid sequence and predicted structure of Streptomyces griseus protease A.
    FEBS Lett. 1974 Oct 1;47(1):1-6 PMID: 4214713
  15. A linear equation that describes the steady-state kinetics of enzymes and subcellular particles interacting with tightly bound inhibitors.
    Biochem J. 1972 Apr;127(2):321-33 PMID: 4263188
  16. Enzymatic catalysis and transition-state theory.
    Science. 1973 Apr 15;180(4082):149-54 PMID: 4632837
  17. Peptide aldehydes inhibiting chymotrypsin.
    Biochem Biophys Res Commun. 1972 Oct 17;49(2):343-9 PMID: 4640362
  18. Aldehydes as inhibitors of papain.
    J Biol Chem. 1972 Dec 25;247(24):8195-7 PMID: 4640942
  19. Use of peptide aldehydes to generate transition-state analogs of elastase.
    Biochemistry. 1973 Jan 2;12(1):47-51 PMID: 4734224
  20. The structure of chymostatin, a chymotrypsin inhibitor.
    J Antibiot (Tokyo). 1973 Nov;26(11):625-46 PMID: 4792111
  21. Real-space refinement of the structure of hen egg-white lysozyme.
    J Mol Biol. 1974 Jan 25;82(3):371-91 PMID: 4856347
  22. An improved fractionation system for pronase on CM-sephadex.
    Can J Biochem. 1971 Nov;49(11):1195-201 PMID: 5002601
  23. An x-ray crystallographic study of the binding of peptide chloromethyl ketone inhibitors to subtilisin BPN'.
    Biochemistry. 1972 Jun 20;11(13):2439-49 PMID: 5040650
  24. Substrate binding site in bovine chymotrypsin A-gamma. A crystallographic study using peptide chloromethyl ketones as site-specific inhibitors.
    Biochemistry. 1971 Sep 28;10(20):3728-38 PMID: 5107010
  25. The matching of physical models to three-dimensional electron-density maps: a simple optical device.
    J Mol Biol. 1968 Oct 14;37(1):225-30 PMID: 5760491
  26. On the size of the active site in proteases. I. Papain.
    Biochem Biophys Res Commun. 1967 Apr 20;27(2):157-62 PMID: 6035483
  27. Transition state analog inhibitors and enzyme catalysis.
    Annu Rev Biophys Bioeng. 1976;5:271-306 PMID: 7991
  28. The active centers of Streptomyces griseus protease 3 and alpha-chymotrypsin: enzyme-substrate interactions remote from the scissile bond.
    Biochemistry. 1976 Mar 23;15(6):1291-5 PMID: 814924
  29. Peptide aldehydes: potent inhibitors of serine and cysteine proteases.
    Methods Enzymol. 1977;46:220-5 PMID: 909410
  30. Amino acid sequence alignment of bacterial and mammalian pancreatic serine proteases based on topological equivalences.
    Can J Biochem. 1978 Jun;56(6):396-402 PMID: 96920
  31. NMR evidence against covalent attachment of an aldehyde 'transition-state' analogue to alpha-chymotrypsin.
    Biochem Biophys Res Commun. 1976 Nov 8;73(1):105-11 PMID: 999692
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1979-01-00
Pages
96-100
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC382883
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]