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PMID: 10677495 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

A double-hexamer archaeal minichromosome maintenance protein is an ATP-dependent DNA helicase.

Chong JP, Hayashi MK, Simon MN, Xu RM, Stillman B

Abstract

The minichromosome maintenance (MCM) proteins are essential for DNA replication in eukaryotes. Thus far, all eukaryotes have been shown to contain six highly related MCMs that apparently function together in DNA replication. Sequencing of the entire genome of the thermophilic archaeon Methanobacterium thermoautotrophicum has allowed us to identify only a single MCM-like gene (ORF Mt1770). This gene is most similar to MCM4 in eukaryotic cells. Here we have expressed and purified the M. thermoautotrophicum MCM protein. The purified protein forms a complex that has a molecular mass of approximately 850 kDa, consistent with formation of a double hexamer. The protein has an ATP-independent DNA-binding activity, a DNA-stimulated ATPase activity that discriminates between single- and double-stranded DNA, and a strand-displacement (helicase) activity that can unwind up to 500 base pairs. The 3' to 5' helicase activity requires both ATP hydrolysis and a functional nucleotide-binding site. Moreover, the double hexamer form is the active helicase. It is therefore likely that an MCM complex acts as the replicative DNA helicase in eukaryotes and archaea. The simplified replication machinery in archaea may provide a simplified model for assembly of the machinery required for initiation of eukaryotic DNA replication.

MeSH Terms
Adenosine Triphosphatases/metabolism Adenosine Triphosphate/pharmacology Archaeal Proteins/metabolism,ultrastructure Centrifugation, Density Gradient DNA Helicases/metabolism,ultrastructure DNA Replication DNA-Binding Proteins/metabolism Escherichia coli Magnesium/metabolism Methanobacterium/enzymology Microscopy, Electron Protein Conformation Recombinant Proteins
Chemicals
Archaeal Proteins DNA-Binding Proteins Recombinant Proteins Adenosine Triphosphate Adenosine Triphosphatases DNA Helicases MCM protein, Methanobacterium thermoautotrophicum Magnesium
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Chong J P
Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.
Hayashi M K
Simon M N
Xu R M
Stillman B
References (44)
44 references, click to expand
  1. Binding of human minichromosome maintenance proteins with histone H3.
    J Biol Chem. 1996 Sep 27;271(39):24115-22 PMID: 8798650
  2. Association of RPA with chromosomal replication origins requires an Mcm protein, and is regulated by Rad53, and cyclin- and Dbf4-dependent kinases.
    EMBO J. 1998 Sep 1;17(17):5182-91 PMID: 9724654
  3. Interaction between the origin recognition complex and the replication licensing system in Xenopus.
    Cell. 1996 Oct 18;87(2):287-96 PMID: 8861912
  4. The role of MCM proteins in the cell cycle control of genome duplication.
    Bioessays. 1996 Mar;18(3):183-90 PMID: 8867732
  5. CDC45, a novel yeast gene that functions with the origin recognition complex and Mcm proteins in initiation of DNA replication.
    Mol Cell Biol. 1997 Feb;17(2):553-63 PMID: 9001208
  6. Mouse MCM proteins: complex formation and transportation to the nucleus.
    Genes Cells. 1996 Nov;1(11):977-93 PMID: 9077461
  7. Cdc6p-dependent loading of Mcm proteins onto pre-replicative chromatin in budding yeast.
    Proc Natl Acad Sci U S A. 1997 May 27;94(11):5611-6 PMID: 9159120
  8. The RLF-M component of the replication licensing system forms complexes containing all six MCM/P1 polypeptides.
    EMBO J. 1997 Jun 2;16(11):3312-9 PMID: 9214646
  9. Licensing of DNA replication by a multi-protein complex of MCM/P1 proteins in Xenopus eggs.
    EMBO J. 1997 Jun 2;16(11):3320-31 PMID: 9214647
  10. Archaea and the origin(s) of DNA replication proteins.
    Cell. 1997 Jun 27;89(7):995-8 PMID: 9215620
  11. High-molecular-mass complexes of human minichromosome-maintenance proteins in mitotic cells.
    Eur J Biochem. 1997 Jul 1;247(1):136-41 PMID: 9249019
  12. Loading of an Mcm protein onto DNA replication origins is regulated by Cdc6p and CDKs.
    Cell. 1997 Aug 22;90(4):649-60 PMID: 9288745
  13. A DNA helicase activity is associated with an MCM4, -6, and -7 protein complex.
    J Biol Chem. 1997 Sep 26;272(39):24508-13 PMID: 9305914
  14. Archaea and the cell cycle.
    Mol Microbiol. 1998 Aug;29(4):955-61 PMID: 9767564
  15. Identification and characterization of a single-stranded DNA-binding protein from the archaeon Methanococcus jannaschii.
    Proc Natl Acad Sci U S A. 1998 Dec 8;95(25):14634-9 PMID: 9843941
  16. Biochemical and electron microscopic image analysis of the hexameric E1 helicase.
    J Biol Chem. 1999 Feb 12;274(7):4447-58 PMID: 9933649
  17. The RLF-B component of the replication licensing system is distinct from Cdc6 and functions after Cdc6 binds to chromatin.
    Curr Biol. 1999 Feb 25;9(4):211-4 PMID: 10074431
  18. Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1.
    DNA Res. 1999 Apr 30;6(2):83-101, 145-52 PMID: 10382966
  19. The role of MCM/P1 proteins in the licensing of DNA replication.
    Trends Biochem Sci. 1996 Mar;21(3):102-6 PMID: 8882583
  20. Components and dynamics of DNA replication complexes in S. cerevisiae: redistribution of MCM proteins and Cdc45p during S phase.
    Cell. 1997 Oct 3;91(1):59-69 PMID: 9335335
  21. A globular complex formation by Nda1 and the other five members of the MCM protein family in fission yeast.
    Genes Cells. 1997 Jul;2(7):467-79 PMID: 9366552
  22. Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.
    J Bacteriol. 1997 Nov;179(22):7135-55 PMID: 9371463
  23. The filamentous phage pIV multimer visualized by scanning transmission electron microscopy.
    Science. 1997 Nov 28;278(5343):1635-8 PMID: 9374466
  24. Biochemical analysis of the intrinsic Mcm4-Mcm6-mcm7 DNA helicase activity.
    Mol Cell Biol. 1999 Dec;19(12):8003-15 PMID: 10567526
  25. MCM proteins in DNA replication.
    Annu Rev Biochem. 1999;68:649-86 PMID: 10872463
  26. Determination of molecular weights and frictional ratios of proteins in impure systems by use of gel filtration and density gradient centrifugation. Application to crude preparations of sulfite and hydroxylamine reductases.
    Biochim Biophys Acta. 1966 Feb 7;112(2):346-62 PMID: 5329026
  27. Mutants of S. cerevisiae defective in the maintenance of minichromosomes.
    Genetics. 1984 Mar;106(3):365-85 PMID: 6323245
  28. The unwinding of duplex regions in DNA by the simian virus 40 large tumor antigen-associated DNA helicase activity.
    J Biol Chem. 1988 Jan 5;263(1):383-92 PMID: 2826443
  29. ATP-dependent assembly of double hexamers of SV40 T antigen at the viral origin of DNA replication.
    Nature. 1989 Apr 20;338(6217):658-62 PMID: 2539565
  30. Effect of manganese ions on the incorporation of dideoxynucleotides by bacteriophage T7 DNA polymerase and Escherichia coli DNA polymerase I.
    Proc Natl Acad Sci U S A. 1989 Jun;86(11):4076-80 PMID: 2657738
  31. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.
    Proc Natl Acad Sci U S A. 1990 Jun;87(12):4576-9 PMID: 2112744
  32. Simian virus 40 T-antigen DNA helicase is a hexamer which forms a binary complex during bidirectional unwinding from the viral origin of DNA replication.
    J Virol. 1992 Feb;66(2):804-15 PMID: 1309914
  33. Characterization of the DNA-dependent ATPase and a DNA unwinding activity associated with the yeast DNA polymerase alpha complex.
    Biochemistry. 1993 Mar 30;32(12):3020-6 PMID: 8384485
  34. The E1 protein of bovine papilloma virus 1 is an ATP-dependent DNA helicase.
    Proc Natl Acad Sci U S A. 1993 Jun 1;90(11):5086-90 PMID: 8389467
  35. A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication.
    Nucleic Acids Res. 1993 Jun 11;21(11):2541-7 PMID: 8332451
  36. Identification of the yeast MCM3-related protein as a component of Xenopus DNA replication licensing factor.
    Cell. 1995 May 19;81(4):601-9 PMID: 7758114
  37. Purification of an MCM-containing complex as a component of the DNA replication licensing system.
    Nature. 1995 Jun 1;375(6530):418-21 PMID: 7760937
  38. ORC and Cdc6p interact and determine the frequency of initiation of DNA replication in the genome.
    Cell. 1995 Jun 2;81(5):667-76 PMID: 7774008
  39. DNA2 encodes a DNA helicase essential for replication of eukaryotic chromosomes.
    J Biol Chem. 1995 Nov 10;270(45):26766-9 PMID: 7592912
  40. The nuclear envelope prevents reinitiation of replication by regulating the binding of MCM3 to chromatin in Xenopus egg extracts.
    Curr Biol. 1995 Nov 1;5(11):1270-9 PMID: 8574584
  41. DNA helicases: new breeds of translocating motors and molecular pumps.
    Cell. 1996 Jul 26;86(2):177-80 PMID: 8706121
  42. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus.
    Nature. 1997 Nov 27;390(6658):364-70 PMID: 9389475
  43. Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.
    DNA Res. 1998 Apr 30;5(2):55-76 PMID: 9679194
  44. The Xenopus Cdc6 protein is essential for the initiation of a single round of DNA replication in cell-free extracts.
    Cell. 1996 Oct 4;87(1):53-63 PMID: 8858148
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2000-02-15
Pages
1530-5
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC26469
Subset
IM
Grants
NCRR NIH HHS · P41 RR001777 · United States
NIGMS NIH HHS · R01 GM045436 · United States
NIGMS NIH HHS · GM45436 · United States
NCRR NIH HHS · P41-RR01777 · United States
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