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PMID: 10869026 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

RRTree: relative-rate tests between groups of sequences on a phylogenetic tree.

Bioinformatics (Oxford, England) ·Vol. 16 ·No. 3 ·2000-03-00 ·Pages 296-7

Robinson-Rechavi M, Huchon D

Abstract

RRTree is a user-friendly program for comparing substitution rates between lineages of protein or DNA sequences, relative to an outgroup, through relative rate tests. Genetic diversity is taken into account through use of several sequences, and phylogenetic relations are integrated by topological weighting. The ANSI C source code of RRTree, and compiled versions for Macintosh, MS-DOS/Windows, SUN Solaris, and CGI, are freely available at http://pbil.univ-lyon1.fr/software/rrtree.html [email protected]

MeSH Terms
Algorithms DNA/chemistry Phylogeny Proteins/chemistry Sequence Analysis/methods Software
Chemicals
Proteins DNA
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Robinson-Rechavi M
Department of Zoology, Tel Aviv University, Ramat Aviv 69978, Israel Institut des Sciences de l'Evolution, UniversitéMontpellier 2, 34095 Montpellier, France. [email protected]
Huchon D
Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4803
Published
2000-03-00
Pages
296-7
Language
English
Region
England
NLM ID
9808944
Subset
IM
Analysis Services
Analysis Services

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