Abstract
Using a coupled, in vitro transcription and polyadenylation system we have investigated the molecular mechanism of transcriptional termination by RNA polymerase II (PolII). We showed previously that specific G-rich sequences pause transcription and then activate polyadenylation. We show that physiological pause sites activate polyadenylation in our in vitro system. We also investigate the mechanism of PolII transcriptional termination, and show that these transcripts are either directly released from the transcription complex or are 3' end processed while still attached to the complex. We also show that 3' product (generated by cleavage/polyadenylation) remains associated with the transcription complex, but is rapidly degraded on it.
MeSH Terms
Complement C2/genetics
DNA/genetics,metabolism
DNA-Binding Proteins
Humans
Oligodeoxyribonucleotides/genetics,metabolism
Poly A/genetics,metabolism
RNA Polymerase II/metabolism
RNA Processing, Post-Transcriptional/genetics
RNA, Messenger/genetics,metabolism
Response Elements/genetics
Sarcosine/analogs & derivatives,pharmacology
Templates, Genetic
Terminator Regions, Genetic/genetics
Transcription Factors/genetics,metabolism
Transcription, Genetic/drug effects,genetics
Chemicals
Complement C2
DNA-Binding Proteins
Oligodeoxyribonucleotides
RNA, Messenger
Transcription Factors
c-MYC-associated zinc finger protein
Poly A
sarkosyl
DNA
RNA Polymerase II
Sarcosine
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Yonaha M
Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK.
Proudfoot N J
References (25)
25 references, click to expand
-
MAZ-dependent termination between closely spaced human complement genes.
EMBO J. 1994 Dec 1;13(23):5656-67
PMID: 7988563
-
Poly(A) signals and transcriptional pause sites combine to prevent interference between RNA polymerase II promoters.
EMBO J. 1993 Jun;12(6):2539-48
PMID: 8508777
-
Transcriptional termination signals for RNA polymerase II in fission yeast.
EMBO J. 1997 Jun 16;16(12):3633-43
PMID: 9218804
-
Transcription factor TFIID recruits factor CPSF for formation of 3' end of mRNA.
Nature. 1997 Sep 25;389(6649):399-402
PMID: 9311784
-
Coupling termination of transcription to messenger RNA maturation in yeast.
Science. 1998 Apr 10;280(5361):298-301
PMID: 9535662
-
Transcriptional termination in the Balbiani ring 1 gene is closely coupled to 3'-end formation and excision of the 3'-terminal intron.
Genes Dev. 1998 Sep 1;12(17):2759-69
PMID: 9732273
-
RNA polymerase II is an essential mRNA polyadenylation factor.
Nature. 1998 Sep 3;395(6697):93-6
PMID: 9738505
-
Co-transcriptional commitment to alternative splice site selection.
Nucleic Acids Res. 1998 Dec 15;26(24):5568-72
PMID: 9837984
-
Definition of transcriptional pause elements in fission yeast.
Mol Cell Biol. 1999 Feb;19(2):1251-61
PMID: 9891059
-
Terminal exon definition occurs cotranscriptionally and promotes termination of RNA polymerase II.
Mol Cell. 1999 Mar;3(3):371-8
PMID: 10198639
-
Specific transcriptional pausing activates polyadenylation in a coupled in vitro system.
Mol Cell. 1999 May;3(5):593-600
PMID: 10360175
-
EM visualization of transcription by RNA polymerase II: downstream termination requires a poly(A) signal but not transcript cleavage.
Mol Cell. 1999 Mar;3(3):379-87
PMID: 10198640
-
Separation and partial characterization of three functional steps in transcription initiation by human RNA polymerase II.
J Biol Chem. 1985 Jul 5;260(13):8163-72
PMID: 2409080
-
Transcriptional interference and termination between duplicated alpha-globin gene constructs suggests a novel mechanism for gene regulation.
Nature. 1986 Aug 7-13;322(6079):562-5
PMID: 3736674
-
Alpha-thalassaemia caused by a poly(A) site mutation reveals that transcriptional termination is linked to 3' end processing in the human alpha 2 globin gene.
EMBO J. 1986 Nov;5(11):2915-22
PMID: 3024968
-
A poly(A) addition site and a downstream termination region are required for efficient cessation of transcription by RNA polymerase II in the mouse beta maj-globin gene.
Proc Natl Acad Sci U S A. 1987 Dec;84(23):8306-10
PMID: 3479794
-
A functional mRNA polyadenylation signal is required for transcription termination by RNA polymerase II.
Genes Dev. 1988 Apr;2(4):440-52
PMID: 2836265
-
How RNA polymerase II terminates transcription in higher eukaryotes.
Trends Biochem Sci. 1989 Mar;14(3):105-10
PMID: 2658217
-
The negative charge of Glu-111 is required to activate the cleavage center of EcoRI endonuclease.
J Biol Chem. 1989 Jul 15;264(20):11816-21
PMID: 2745418
-
Definition of an efficient synthetic poly(A) site.
Genes Dev. 1989 Jul;3(7):1019-25
PMID: 2570734
-
RNA polymerase II transcription termination is mediated specifically by protein binding to a CCAAT box sequence.
Mol Cell Biol. 1989 Nov;9(11):5254-9
PMID: 2601722
-
A pause site for RNA polymerase II is associated with termination of transcription.
EMBO J. 1991 Jul;10(7):1833-42
PMID: 2050120
-
Transcriptional termination between the closely linked human complement genes C2 and factor B: common termination factor for C2 and c-myc?
EMBO J. 1991 Dec;10(13):4197-207
PMID: 1756727
-
3' RNA processing efficiency plays a primary role in generating termination-competent RNA polymerase II elongation complexes.
Mol Cell Biol. 1993 Jun;13(6):3472-80
PMID: 7684499
-
The C-terminal domain of RNA polymerase II couples mRNA processing to transcription.
Nature. 1997 Jan 23;385(6614):357-61
PMID: 9002523