Home LiteratureArticle Details
PMID: 10922054 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Hydrolytic editing by a class II aminoacyl-tRNA synthetase.

Beuning PJ, Musier-Forsyth K

Abstract

Editing reactions catalyzed by aminoacyl-tRNA synthetases are critical for accurate translation of the genetic code. To date, this activity, whereby misactivated amino acids are hydrolyzed either before or after transfer to noncognate tRNAs, has been characterized extensively only in the case of class I synthetases. Class II synthetases have an active-site architecture that is completely distinct from that of class I. Thus, findings on editing by class I synthetases may not be applicable generally to class II enzymes. Class II Escherichia coli proline-tRNA synthetase is shown here to misactivate alanine and to hydrolyze the noncognate amino acid before transfer to tRNA(Pro). This enzyme also is capable of rapidly deacylating a mischarged Ala-tRNA(Pro) variant. A single cysteine residue (C443) that is located within the class II-specific motif 3 consensus sequence was shown previously to be dispensable for proline-tRNA synthetase aminoacylation activity. We show here that C443 is critical for the hydrolytic editing of Ala-tRNA(Pro) by this class II synthetase.

MeSH Terms
Amino Acyl-tRNA Synthetases/chemistry,metabolism Cysteine/metabolism Escherichia coli/enzymology Hydrolysis RNA Editing
Chemicals
Amino Acyl-tRNA Synthetases Cysteine
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Beuning P J
Department of Chemistry, University of Minnesota, 207 Pleasant Street Southeast, Minneapolis, MN 55455, USA.
Musier-Forsyth K
References (38)
38 references, click to expand
  1. Transfer ribonucleic acid-induced hydrolysis of valyladenylate bound to isoleucyl ribonucleic acid synthetase.
    J Biol Chem. 1966 Feb 25;241(4):839-45 PMID: 5324173
  2. Universal rules and idiosyncratic features in tRNA identity.
    Nucleic Acids Res. 1998 Nov 15;26(22):5017-35 PMID: 9801296
  3. Enzymatic aminoacylation of single-stranded RNA with an RNA cofactor.
    Proc Natl Acad Sci U S A. 1991 Jan 1;88(1):209-13 PMID: 1986368
  4. CP1 domain in Escherichia coli leucyl-tRNA synthetase is crucial for its editing function.
    Biochemistry. 2000 Jun 6;39(22):6726-31 PMID: 10828991
  5. Rapid deacylation by isoleucyl transfer ribonucleic acid synthetase of isoleucine-specific transfer ribonucleic acid aminoacylated with valine.
    J Biol Chem. 1972 May 10;247(9):2961-4 PMID: 4554364
  6. Transfer RNA-dependent translocation of misactivated amino acids to prevent errors in protein synthesis.
    Mol Cell. 1999 Oct;4(4):519-28 PMID: 10549284
  7. Role of zinc ion in translational accuracy becomes crystal clear.
    Nat Struct Biol. 2000 Jun;7(6):435-6 PMID: 10881182
  8. Association of transfer RNA acceptor identity with a helical irregularity.
    Science. 1988 Dec 23;242(4886):1681-4 PMID: 2462282
  9. Enzymic editing mechanisms and the genetic code.
    Proc R Soc Lond B Biol Sci. 1981 Aug 19;212(1189):351-79 PMID: 6116235
  10. Chemical modification and site-directed mutagenesis of the single cysteine in motif 3 of class II Escherichia coli prolyl-tRNA synthetase.
    Biochemistry. 1997 Mar 11;36(10):2932-8 PMID: 9062123
  11. Alternative pathways for editing non-cognate amino acids by aminoacyl-tRNA synthetases.
    Nucleic Acids Res. 1981 Jul 10;9(13):3105-17 PMID: 7024910
  12. Molecular recognition of tRNA(Pro) by Escherichia coli proline tRNA synthetase in vitro.
    Nucleic Acids Res. 1995 Jan 11;23(1):165-9 PMID: 7870582
  13. Amino acid pool of Escherichia coli during the different phases of growth.
    Acta Chem Scand. 1970;24(8):2737-44 PMID: 4927337
  14. Kinetic amplification of enzyme discrimination.
    Biochimie. 1975;57(5):587-95 PMID: 1182215
  15. Aminoacyl thioester chemistry of class II aminoacyl-tRNA synthetases.
    Biochemistry. 1997 Sep 16;36(37):11077-85 PMID: 9287150
  16. Discrete determinants in transfer RNA for editing and aminoacylation.
    Science. 1997 May 23;276(5316):1250-2 PMID: 9157882
  17. Transfer ribonucleic acid synthetase catalyzed deacylation of aminoacyl transfer ribonucleic acid in the absence of adenosine monophosphate and pyrophosphate.
    Biochemistry. 1972 Apr 25;11(9):1582-9 PMID: 4337554
  18. Probing the principles of amino acid selection using the alanyl-tRNA synthetase from Escherichia coli.
    Nucleic Acids Res. 1981 Sep 25;9(18):4627-37 PMID: 6117825
  19. Zinc ion mediated amino acid discrimination by threonyl-tRNA synthetase.
    Nat Struct Biol. 2000 Jun;7(6):461-5 PMID: 10881191
  20. Insights into editing from an ile-tRNA synthetase structure with tRNAile and mupirocin.
    Science. 1999 Aug 13;285(5430):1074-7 PMID: 10446055
  21. Aminoacylation error correction.
    Nature. 1996 Nov 7;384(6604):33-4 PMID: 8900273
  22. Accuracy of protein biosynthesis: quasi-species nature of proteins and possibility of error catastrophes.
    J Theor Biol. 1998 Jul 7;193(1):19-38 PMID: 9689940
  23. Escherichia coli proline tRNA synthetase is sensitive to changes in the core region of tRNA(Pro).
    Biochemistry. 1994 Oct 25;33(42):12708-14 PMID: 7522561
  24. Distinctive acceptor-end structure and other determinants of Escherichia coli tRNAPro identity.
    Nucleic Acids Res. 1994 Feb 11;22(3):522-9 PMID: 8127693
  25. Editing of errors in selection of amino acids for protein synthesis.
    Microbiol Rev. 1992 Sep;56(3):412-29 PMID: 1406490
  26. Mutational isolation of a sieve for editing in a transfer RNA synthetase.
    Science. 1994 Apr 8;264(5156):265-7 PMID: 8146659
  27. Cognition, mechanism, and evolutionary relationships in aminoacyl-tRNA synthetases.
    Annu Rev Biochem. 1993;62:715-48 PMID: 8352600
  28. Species-specific differences in the operational RNA code for aminoacylation of tRNAPro.
    Biochemistry. 1998 Jun 9;37(23):8605-13 PMID: 9622512
  29. Nucleotide determinants for tRNA-dependent amino acid discrimination by a class I tRNA synthetase.
    Biochemistry. 1999 Dec 21;38(51):16898-903 PMID: 10606524
  30. Active site titration and aminoacyl adenylate binding stoichiometry of aminoacyl-tRNA synthetases.
    Biochemistry. 1975 Jan 14;14(1):1-4 PMID: 1109585
  31. A simple structural feature is a major determinant of the identity of a transfer RNA.
    Nature. 1988 May 12;333(6169):140-5 PMID: 3285220
  32. Amino acid antagonist death in Escherichia coli.
    J Bacteriol. 1969 Jul;99(1):336-8 PMID: 4895850
  33. Incorrect heterologous aminoacylation of various yeast tRNAS catalysed by E. coli valyl-tRNA synthetase.
    FEBS Lett. 1971 Jul 1;15(4):281-285 PMID: 11945864
  34. The biosynthesis of collagen.
    Annu Rev Biochem. 1974;43(0):567-603 PMID: 4605221
  35. Misacylation of tRNALys with noncognate amino acids by lysyl-tRNA synthetase.
    Biochemistry. 1999 Jun 22;38(25):8088-93 PMID: 10387054
  36. Enzyme structure with two catalytic sites for double-sieve selection of substrate.
    Science. 1998 Apr 24;280(5363):578-82 PMID: 9554847
  37. Phenylalanyl-tRNA synthetase and isoleucyl-tRNA Phe : a possible verification mechanism for aminoacyl-tRNA.
    Proc Natl Acad Sci U S A. 1972 Jul;69(7):1915-9 PMID: 4558664
  38. tRNA(Pro) anticodon recognition by Thermus thermophilus prolyl-tRNA synthetase.
    Structure. 1998 Jan 15;6(1):101-8 PMID: 9493271
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2000-08-01
Pages
8916-20
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC16796
Subset
IM
Grants
NIGMS NIH HHS · R01 GM049928 · United States
NIGMS NIH HHS · GM42298 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]