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PMID: 11061223 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

On the similarity of properties in solution or in the crystalline state: a molecular dynamics study of hen lysozyme.

Journal of biomolecular NMR ·Vol. 18 ·No. 1 ·2000-09-00 ·Pages 1-12

Stocker U, Spiegel K, van Gunsteren WF

Abstract

As protein crystals generally possess a high water content, it is assumed that the behaviour of a protein in solution and in crystal environment is very similar. This assumption can be investigated by molecular dynamics (MD) simulation of proteins in the different environments. Two 2ns simulations of hen egg white lysozyme (HEWL) in crystal and solution environment are compared to one another and to experimental data derived from both X-ray and NMR experiments, such as crystallographic B-factors, NOE atom-atom distance bounds, 3J(H N alpha)-coupling constants, and 1H-15N bond vector order parameters. Both MD simulations give very similar results. The crystal simulation reproduces X-ray and NMR data slightly better than the solution simulation.

MeSH Terms
Animals Chickens Computer Simulation Crystallography, X-Ray Female Motion Muramidase/chemistry Nuclear Magnetic Resonance, Biomolecular Solutions
Chemicals
Solutions Muramidase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Stocker U
Laboratory of Physical Chemistry, Swiss Federal Institute of Technology, Zürich. [email protected]
Spiegel K
van Gunsteren W F
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21 references, click to expand
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Article Info
Journal
Journal of biomolecular NMR
Abbr.
J Biomol NMR
ISSN
0925-2738
Published
2000-09-00
Pages
1-12
Language
English
Region
Netherlands
NLM ID
9110829
Subset
IM
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