Abstract
Retinochrome is a member of the rhodopsin family having a chromophore retinal and functioning as a retinal photoisomerase in squid photoreceptor cells. Unlike vertebrate rhodopsins, but like many invertebrate rhodopsins, retinochrome does not have a glutamic acid at position 113 to serve as a counterion for the protonated retinylidene Schiff base. Here we investigated possible counterions in retinochrome by site-specific mutagenesis. Our results showed that the counterion is the glutamic acid at position 181, at which almost all the pigments in the rhodopsin family, including vertebrate and invertebrate rhodopsins, have a glutamic or aspartic acid. The remarkable exceptions are the long-wavelength visual pigments that have a histidine that, together with a nearby lysine, serves as a chloride-binding site. Replacement of Glu-181 of bovine rhodopsin with Gln caused a 10-nm red-shift of absorption maximum. Because the position at 181 is in the extracellular loop connecting the transmembrane helices VI and V, these results demonstrate the importance of this loop to function for spectral tuning in the rhodopsin family.
MeSH Terms
Amino Acid Sequence
Animals
Aspartic Acid/genetics,metabolism
Bacteriorhodopsins/genetics,metabolism
Binding Sites
Cattle
Cell Line
Conserved Sequence
Extracellular Space
Glutamic Acid/genetics,metabolism
Humans
Models, Molecular
Molecular Sequence Data
Mutagenesis, Site-Directed
Protein Structure, Secondary
Retinal Pigments/chemistry,genetics,metabolism
Rhodopsin/chemistry,classification,genetics,metabolism
Spectrophotometry/methods
Chemicals
Retinal Pigments
Aspartic Acid
Glutamic Acid
Bacteriorhodopsins
retinochrome
Rhodopsin
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Terakita A
Department of Biophysics, Graduate School of Science, Kyoto University and Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Corporation, Kyoto 606-8502, Japan.
[email protected]
Yamashita T
Shichida Y
References (29)
29 references, click to expand
-
Heterogeneity of rhodopsin intermediate state interacting with transducin.
Methods Enzymol. 2000;315:347-63
PMID: 10736712
-
How vertebrate and invertebrate visual pigments differ in their mechanism of photoactivation.
Proc Natl Acad Sci U S A. 1999 May 25;96(11):6189-92
PMID: 10339563
-
New photosensitive pigment found in the retina of the squid Ommastrephes.
Nature. 1965 Jun 26;206(991):1331-4
PMID: 5838244
-
Rhodopsin and retinochrome in the octopus retina.
Nature. 1967 May 6;214(5088):572-3
PMID: 6036170
-
Regeneration of squid retinochrome.
Nature. 1968 Aug 3;219(5153):450-4
PMID: 5668423
-
Isomerization of retinal catalysed by retinochrome in the light.
Nat New Biol. 1973 Mar 14;242(115):39-43
PMID: 4512007
-
Halide control of color of the chicken cone pigment iodopsin.
Exp Eye Res. 1979 Oct;29(4):401-8
PMID: 510429
-
The chloride effect in chicken red cone receptors.
Vision Res. 1980;20(6):475-83
PMID: 7434582
-
Monoclonal antibodies to rhodopsin: characterization, cross-reactivity, and application as structural probes.
Biochemistry. 1983 Feb 1;22(3):653-60
PMID: 6188482
-
Isolation and characterization of a retinal-binding protein from the squid retina.
Vision Res. 1987;27(7):1057-70
PMID: 3660660
-
Glutamic acid-113 serves as the retinylidene Schiff base counterion in bovine rhodopsin.
Proc Natl Acad Sci U S A. 1989 Nov;86(21):8309-13
PMID: 2573063
-
Effect of carboxylic acid side chains on the absorption maximum of visual pigments.
Science. 1989 Nov 17;246(4932):928-30
PMID: 2573154
-
Retinal-binding protein as a shuttle for retinal in the rhodopsin-retinochrome system of the squid visual cells.
Vision Res. 1989;29(6):639-52
PMID: 2626821
-
Effects of chloride on chicken iodopsin and the chromophore transfer reactions from iodopsin to scotopsin and B-photopsin.
Biochemistry. 1990 Jun 19;29(24):5843-8
PMID: 2383562
-
Cloning and nucleotide sequence of cDNA for retinochrome, retinal photoisomerase from the squid retina.
FEBS Lett. 1990 Oct 1;271(1-2):106-10
PMID: 2226795
-
Determinants of visual pigment absorbance: identification of the retinylidene Schiff's base counterion in bovine rhodopsin.
Biochemistry. 1990 Oct 16;29(41):9746-52
PMID: 1980212
-
Fourier transform infrared spectroscopic study on retinochrome and its primary photoproduct, lumiretinochrome.
FEBS Lett. 1991 Mar 11;280(1):107-11
PMID: 2009953
-
Anion binding to the Schiff base of the bacteriorhodopsin mutants Asp-85----Asn/Asp-212----Asn and Arg-82----Gln/Asp-85----Asn/Asp-212----Asn.
J Biol Chem. 1992 Aug 25;267(24):16922-7
PMID: 1512233
-
Identification of the Cl(-)-binding site in the human red and green color vision pigments.
Biochemistry. 1993 Mar 9;32(9):2125-30
PMID: 8443153
-
Amino acid sequence surrounding the retinal-binding site in retinochrome of the squid, Todarodes pacificus.
FEBS Lett. 1993 Nov 29;335(1):94-8
PMID: 8243675
-
An opsin homologue in the retina and pigment epithelium.
Invest Ophthalmol Vis Sci. 1993 Dec;34(13):3669-78
PMID: 8258527
-
Rhodopsin mutation G90D and a molecular mechanism for congenital night blindness.
Nature. 1994 Feb 17;367(6464):639-42
PMID: 8107847
-
Studies on rhodopsin. VIII. Retinylidenemethylamine, an indicator yellow analogue.
Biochem J. 1955 Jan;59(1):122-8
PMID: 14351151
-
Cloning and expression of frog rhodopsin cDNA.
Comp Biochem Physiol B Biochem Mol Biol. 1995 Mar;110(3):599-604
PMID: 7584833
-
Water and peptide backbone structure in the active center of bovine rhodopsin.
Biochemistry. 1997 May 20;36(20):6164-70
PMID: 9166788
-
A novel Go-mediated phototransduction cascade in scallop visual cells.
J Biol Chem. 1997 Sep 12;272(37):22979-82
PMID: 9287291
-
The endogenous chromophore of retinal G protein-coupled receptor opsin from the pigment epithelium.
J Biol Chem. 1999 Mar 5;274(10):6085-90
PMID: 10037690
-
Encephalopsin: a novel mammalian extraretinal opsin discretely localized in the brain.
J Neurosci. 1999 May 15;19(10):3681-90
PMID: 10234000
-
Crystal structure of rhodopsin: A G protein-coupled receptor.
Science. 2000 Aug 4;289(5480):739-45
PMID: 10926528