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PMID: 11214971 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Characterization of long cDNA clones from human adult spleen.

Hattori A, Okumura K, Nagase T, Kikuno R, Hirosawa M, Ohara O

Abstract

As an extension of our analysis of long cDNAs, we here report the characterization of cDNA clones from human adult spleen. From 2000 cDNA clones randomly sampled from a size-fractionated human spleen cDNA library (average size 4.5 kb), 97 clones were selected for sequencing according to their ability to code for protein at the 5'-end sequences and the novelty of their end sequences. The sequence data of these clones demonstrated that 87 out of 97 cDNA clones were derived from independent human genes. The average sizes of the inserts and corresponding open reading frames of these 87 cDNAs reached 4.5 kb and 1.4 kb (corresponding to 468 amino acid residues), respectively. In addition to these sequence analyses in silico, the expression profiles of the genes were also studied in ten human adult tissues by reverse transcription-coupled polymerase chain reaction, products of which were quantified by enzyme-linked immunosorbent assay. The results indicated that spleen could be used as an additional source of human long cDNAs to complement the list of human genes.

MeSH Terms
Alternative Splicing Cloning, Molecular DNA, Complementary/metabolism Enzyme-Linked Immunosorbent Assay Gene Library Humans Models, Genetic Open Reading Frames Physical Chromosome Mapping Reverse Transcriptase Polymerase Chain Reaction Spleen/metabolism Tissue Distribution
Chemicals
DNA, Complementary
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Hattori A
Kazusa DNA Research Institute, Kisarazu, Chiba, Japan.
Okumura K
Nagase T
Kikuno R
Hirosawa M
Ohara O
Article Info
Journal
DNA research : an international journal for rapid publication of reports on genes and genomes
Abbr.
DNA Res
ISSN
1340-2838
Published
2000-12-31
Pages
357-66
Language
English
Region
England
NLM ID
9423827
Subset
IM
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