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PMID: 11318629 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

A maximum likelihood method for determining D(a)(PQ) and R for sets of dipolar coupling data.

Journal of magnetic resonance (San Diego, Calif. : 1997) ·Vol. 149 ·No. 2 ·2001-04-00 ·Pages 271-5

Warren JJ, Moore PB

Abstract

The algorithms available today that use dipolar coupling data for macromolecular structure determination require the independent determination of two parameters, D(a)(PQ) and R. Methods exist for obtaining these parameters when the set of dipolar couplings available is large and the orientations of the interatomic vectors on which they report is isotropically distributed. These methods are less satisfactory when the set is small and anisotropic. Described here is a maximum likelihood method that extracts accurate values for D(a)(PQ) and R from small, anisotropic data sets. Also demonstrated is a procedure for estimating the errors associated with the values of D(a)(PQ) and R obtained and for incorporating these errors into refinement protocols.

MeSH Terms
Algorithms Likelihood Functions Nuclear Magnetic Resonance, Biomolecular/methods Nucleic Acids/chemistry Protein Conformation Proteins/chemistry Solutions
Chemicals
Nucleic Acids Proteins Solutions
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Warren J J
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520, USA.
Moore P B
Article Info
Journal
Journal of magnetic resonance (San Diego, Calif. : 1997)
Abbr.
J Magn Reson
ISSN
1090-7807
Published
2001-04-00
Pages
271-5
Language
English
Region
United States
NLM ID
9707935
Subset
IM
Grants
NIGMS NIH HHS · GM61258 · United States
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