Home LiteratureArticle Details
PMID: 11483494 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Structure of human cystathionine beta-synthase: a unique pyridoxal 5'-phosphate-dependent heme protein.

The EMBO journal ·Vol. 20 ·No. 15 ·2001-08-01 ·Pages 3910-6

Meier M, Janosik M, Kery V, Kraus JP, Burkhard P

Abstract

Cystathionine beta-synthase (CBS) is a unique heme- containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Here we present the X-ray crystal structure of a truncated form of the enzyme. CBS shares the same fold with O-acetylserine sulfhydrylase but it contains an additional N-terminal heme binding site. This heme binding motif together with a spatially adjacent oxidoreductase active site motif could explain the regulation of its enzyme activity by redox changes.

MeSH Terms
Amino Acid Sequence Animals Binding Sites Cystathionine beta-Synthase/chemistry,genetics,metabolism Heme/metabolism Hemeproteins/chemistry,genetics,metabolism Humans Models, Molecular Molecular Sequence Data Mutagenesis Oxidoreductases/metabolism Protein Structure, Secondary Pyridoxal Phosphate/metabolism Rabbits
Chemicals
Hemeproteins Heme Pyridoxal Phosphate Oxidoreductases Cystathionine beta-Synthase
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Meier M
M.E.Müller Institute for Structural Biology, Biozentrum, University of Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland.
Janosik M
Kery V
Kraus J P
Burkhard P
References (30)
30 references, click to expand
  1. Characterization of the heme in human cystathionine beta-synthase by X-ray absorption and electron paramagnetic resonance spectroscopies.
    Biochemistry. 2000 Aug 29;39(34):10542-7 PMID: 10956045
  2. Identification of an allosteric anion-binding site on O-acetylserine sulfhydrylase: structure of the enzyme with chloride bound.
    J Mol Biol. 2000 Oct 20;303(2):279-86 PMID: 11023792
  3. Binding of pyridoxal 5'-phosphate to the heme protein human cystathionine beta-synthase.
    Biochemistry. 1999 Mar 2;38(9):2716-24 PMID: 10052942
  4. Transsulfuration in Saccharomyces cerevisiae is not dependent on heme: purification and characterization of recombinant yeast cystathionine beta-synthase.
    J Inorg Biochem. 2000 Aug 31;81(3):161-71 PMID: 11051561
  5. Domain architecture of the heme-independent yeast cystathionine beta-synthase provides insights into mechanisms of catalysis and regulation.
    Biochemistry. 2000 Aug 29;39(34):10548-56 PMID: 10956046
  6. Ligand binding induces a large conformational change in O-acetylserine sulfhydrylase from Salmonella typhimurium.
    J Mol Biol. 1999 Aug 27;291(4):941-53 PMID: 10452898
  7. Three-dimensional structure of O-acetylserine sulfhydrylase from Salmonella typhimurium.
    J Mol Biol. 1998;283(1):121-33 PMID: 9761678
  8. Evolutionary relationships among pyridoxal-5'-phosphate-dependent enzymes. Regio-specific alpha, beta and gamma families.
    Eur J Biochem. 1994 Feb 1;219(3):953-60 PMID: 8112347
  9. Loop closure and intersubunit communication in tryptophan synthase.
    Biochemistry. 1998 Apr 21;37(16):5394-406 PMID: 9548921
  10. Assignment of enzymatic functions to specific regions of the PLP-dependent heme protein cystathionine beta-synthase.
    Biochemistry. 1999 Oct 5;38(40):13155-61 PMID: 10529187
  11. Crystallography & NMR system: A new software suite for macromolecular structure determination.
    Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21 PMID: 9757107
  12. Improved methods for building protein models in electron density maps and the location of errors in these models.
    Acta Crystallogr A. 1991 Mar 1;47 ( Pt 2):110-9 PMID: 2025413
  13. Cystathionine beta-synthase mutations in homocystinuria.
    Hum Mutat. 1999;13(5):362-75 PMID: 10338090
  14. Evidence for heme-mediated redox regulation of human cystathionine beta-synthase activity.
    J Biol Chem. 1998 Sep 25;273(39):25179-84 PMID: 9737978
  15. Komrower Lecture. Molecular basis of phenotype expression in homocystinuria.
    J Inherit Metab Dis. 1994;17(4):383-90 PMID: 7967489
  16. Structure and control of pyridoxal phosphate dependent allosteric threonine deaminase.
    Structure. 1998 Apr 15;6(4):465-75 PMID: 9562556
  17. Hemoprotein H-450 identified as a form of cytochrome P-450 having an endogenous ligand at the 6th coordination position of the heme.
    J Biochem. 1984 Nov;96(5):1491-500 PMID: 6098577
  18. The structure of a domain common to archaebacteria and the homocystinuria disease protein.
    Trends Biochem Sci. 1997 Jan;22(1):12-3 PMID: 9020585
  19. Functional properties of the active core of human cystathionine beta-synthase crystals.
    J Biol Chem. 2001 Jan 5;276(1):16-9 PMID: 11042162
  20. Mutations in the regulatory domain of cystathionine beta synthase can functionally suppress patient-derived mutations in cis.
    Hum Mol Genet. 2001 Mar 15;10(6):635-43 PMID: 11230183
  21. Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus.
    J Biol Chem. 2000 Nov 3;275(44):34557-65 PMID: 10938279
  22. The CCP4 suite: programs for protein crystallography.
    Acta Crystallogr D Biol Crystallogr. 1994 Sep 1;50(Pt 5):760-3 PMID: 15299374
  23. Biosynthesis of human cystathionine beta-synthase in cultured fibroblasts.
    J Biol Chem. 1984 Jan 10;259(1):583-7 PMID: 6706952
  24. Characteristics and crystal structure of bacterial inosine-5'-monophosphate dehydrogenase.
    Biochemistry. 1999 Apr 13;38(15):4691-700 PMID: 10200156
  25. Transsulfuration depends on heme in addition to pyridoxal 5'-phosphate. Cystathionine beta-synthase is a heme protein.
    J Biol Chem. 1994 Oct 14;269(41):25283-8 PMID: 7929220
  26. Crystallization and preliminary X-ray diffraction analysis of the active core of human recombinant cystathionine beta-synthase: an enzyme involved in vascular disease.
    Acta Crystallogr D Biol Crystallogr. 2001 Feb;57(Pt 2):289-91 PMID: 11173483
  27. Three-dimensional structure of the tryptophan synthase alpha 2 beta 2 multienzyme complex from Salmonella typhimurium.
    J Biol Chem. 1988 Nov 25;263(33):17857-71 PMID: 3053720
  28. Vascular complications of severe hyperhomocysteinemia in patients with homocystinuria due to cystathionine beta-synthase deficiency: effects of homocysteine-lowering therapy.
    Semin Thromb Hemost. 2000;26(3):335-40 PMID: 11011851
  29. Trypsin cleavage of human cystathionine beta-synthase into an evolutionarily conserved active core: structural and functional consequences.
    Arch Biochem Biophys. 1998 Jul 15;355(2):222-32 PMID: 9675031
  30. Rat cystathionine beta-synthase. Gene organization and alternative splicing.
    J Biol Chem. 1992 Jun 5;267(16):11455-61 PMID: 1597473
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
2001-08-01
Pages
3910-6
Language
English
Region
England
NLM ID
8208664
PMCID
PMC149156
Subset
IM
Databases
PDB
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]