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PMID: 11735982 Published · ppublish English Journal Article

Chromatin: a tunable spring at work inside chromosomes.

Physical review. E, Statistical, nonlinear, and soft matter physics ·Vol. 64 ·No. 5 Pt 1 ·2001-11-00 ·Pages 051921

Ben-Haïm E, Lesne A, Victor JM

Abstract

This paper focuses on mechanical aspects of chromatin biological functioning. Within a basic geometric modeling of the chromatin assembly, we give a complete set of elastic constants (twist and bend persistence lengths, stretch modulus and twist-stretch coupling constant) of the so-called 30-nm chromatin fiber, in terms of DNA elastic properties and geometric properties of the fiber assembly. The computation naturally embeds the fiber within a current analytical model known as the "extensible wormlike rope," allowing a straightforward prediction of the force-extension curves. We show that these elastic constants are strongly sensitive to the linker length, up to 1 bp, or equivalently to its twist, and might locally reach very low values, yielding a highly flexible and extensible domain in the fiber. In particular, the twist-stretch coupling constant, reflecting the chirality of the chromatin fiber, exhibits steep variations, and sign changes when the linker length is varied. We argue that this tunable elasticity might be a key feature for chromatin function, for instance, in the initiation and regulation of transcription.

MeSH Terms
Biomechanical Phenomena Biophysical Phenomena Biophysics Chromatin/chemistry Chromosomes/chemistry DNA/chemistry Elasticity Histones/chemistry Models, Biological Molecular Conformation Nucleosomes/chemistry
Chemicals
Chromatin Histones Nucleosomes DNA
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Ben-Haïm E
Laboratoire de Physique Théorique des Liquides, Université Pierre et Marie Curie, Case Courrier 121, 4 Place Jussieu, 75252 Paris Cedex 05, France.
Lesne A
Victor J M
Article Info
Journal
Physical review. E, Statistical, nonlinear, and soft matter physics
Abbr.
Phys Rev E Stat Nonlin Soft Matter Phys
ISSN
1539-3755
Published
2001-11-00
Epub
2001-00-30
Pages
051921
Language
English
Region
United States
NLM ID
101136452
Subset
IM
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