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PMID: 11847087 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

PROMO: detection of known transcription regulatory elements using species-tailored searches.

Bioinformatics (Oxford, England) ·Vol. 18 ·No. 2 ·2002-02-00 ·Pages 333-4

Messeguer X, Escudero R, Farré D, Núñez O, Martínez J, Albà MM

Abstract

We have developed a set of tools to construct positional weight matrices from known transcription factor binding sites in a species or taxon-specific manner, and to search for matches in DNA sequences.

MeSH Terms
Animals Binding Sites/genetics Computational Biology DNA/genetics,metabolism Humans Software Species Specificity Transcription Factors/metabolism
Chemicals
Transcription Factors DNA
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Messeguer Xavier
Algorithmics and Genetics Group, Software Department, Universitat Politècnica de Catalunya, C/Jordi Girona Salgado, 1-3, 08034 Barcelona, Spain.
Escudero Ruth
Farré Domènec
Núñez Oscar
Martínez Javier
Albà M Mar
Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4803
DOI
10.1093/bioinformatics/18.2.333
Published
2002-02-00
Pages
333-4
Language
English
Region
England
NLM ID
9808944
Subset
IM
External Links
PubMed source DOI: 10.1093/bioinformatics/18.2.333 View journal details
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