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PMID: 11928484 Published · ppublish English Journal Article

Data standardisation in GlycoSuiteDB.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing ·2002-00-00 ·Pages 297-309

Cooper CA, Harrison MJ, Webster JM, Wilkins MR, Packer NH

Abstract

GlycoSuiteDB, a database of glycan structures, has been constructed with an emphasis on quality, consistency and data integrity. Importance has been placed on making the database a reliable and useful resource for all researchers. This database can help researchers to identify what glycan structures are known to be attached to certain glycoproteins, as well as more generally identifying what types of glycan structures are associated with different states, for example, different species, tissues and diseases. To achieve this, a major effort has gone into data standardisation. Many rules and standards have been adopted, especially for representing glycan structure and biological source information. This paper describes some of the challenges faced during the continuous development of GlycoSuiteDB.

MeSH Terms
Animals Carbohydrate Conformation Carbohydrate Sequence Chickens Glycoproteins/genetics Humans Lewis X Antigen/chemistry,classification Molecular Sequence Data Oligosaccharides/chemistry,classification Ovalbumin/chemistry Polysaccharides/chemistry,classification Recombinant Proteins/chemistry Reproducibility of Results Sialyl Lewis X Antigen
Chemicals
Glycoproteins Lewis X Antigen Oligosaccharides Polysaccharides Recombinant Proteins Sialyl Lewis X Antigen Ovalbumin
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Cooper C A
Proteome Systems Ltd, Locked Bag 2073, North Ryde, NSW 1670, Australia.
Harrison M J
Webster J M
Wilkins M R
Packer N H
Article Info
Journal
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
Abbr.
Pac Symp Biocomput
ISSN
2335-6928
Published
2002-00-00
Pages
297-309
Language
English
Region
United States
NLM ID
9711271
Subset
IM
Analysis Services
Analysis Services

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