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PMID: 11939600 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Multiple grid methods for classical molecular dynamics.

Journal of computational chemistry ·Vol. 23 ·No. 6 ·2002-04-30 ·Pages 673-84

Skeel RD, Tezcan I, Hardy DJ

Abstract

Presented in the context of classical molecular mechanics and dynamics are multilevel summation methods for the fast calculation of energies/forces for pairwise interactions, which are based on the hierarchical interpolation of interaction potentials on multiple grids. The concepts and details underlying multigrid interpolation are described. For integration of molecular dynamics the use of different time steps for different interactions allows longer time steps for many of the interactions, and this can be combined with multiple grids in space. Comparison is made to the fast multipole method, and evidence is presented suggesting that for molecular simulations multigrid methods may be superior to the fast multipole method and other tree methods.

MeSH Terms
Algorithms Chemistry, Physical/statistics & numerical data Models, Chemical Monte Carlo Method
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Skeel Robert D
Department of Computer Science and Beckman Institute, University of Illinois, Urbana 61801-2987, USA. [email protected]
Tezcan Ismail
Hardy David J
Article Info
Journal
Journal of computational chemistry
Abbr.
J Comput Chem
ISSN
0192-8651
Published
2002-04-30
Pages
673-84
Language
English
Region
United States
NLM ID
9878362
Subset
IM
Grants
NCRR NIH HHS · P41RR05969 · United States
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