Home LiteratureArticle Details
PMID: 12077427 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Generating isomorphous heavy-atom derivatives by a quick-soak method. Part I: test cases.

Acta crystallographica. Section D, Biological crystallography ·Vol. 58 ·No. Pt 7 ·2002-07-00 ·Pages 1092-8

Sun PD, Radaev S, Kattah M

Abstract

Screening for heavy-atom derivatives remains a time-consuming and cumbersome process that often results in non-isomorphous derivatives whose phases cannot be combined. Using lysozyme and FcgammaRIII receptor crystals as test cases, an improved soaking method for the generation of conventional heavy-atom derivatives has been developed. The method is based on soaking crystals in heavy-atom compounds for a very brief time at near-saturation concentrations. Compared with the current heavy-atom soaking method, which often takes days to achieve a derivatization, the quick-soak method completes a derivatization within 10 min to 2 h. The bound heavy-atom sites display higher peak heights from quick soaks than from overnight soaks in all cases tested. The quick-soak derivatives also preserved native-like diffraction resolution and data quality that was better than the prolonged-soak derivatives. Furthermore, derivatives generated by brief soaks are more isomorphous to the native than those generated by overnight soaks. Short soaks not only increase the likelihood of success in heavy-atom screening by reducing the pitfalls associated with prolonged soaks, such as lack of isomorphism and overall lattice disorder, but also have the potential to transform a time-consuming derivative screening into an 'on-the-fly' real-time derivatization process.

MeSH Terms
Animals Binding Sites Chickens Crystallography, X-Ray/instrumentation,methods Fourier Analysis Gold Compounds/chemistry Kinetics Mass Spectrometry Mercuric Chloride/chemistry Metals, Heavy/chemistry Models, Molecular Muramidase/chemistry Platinum Compounds/chemistry Potassium Compounds/chemistry Protein Engineering Receptors, IgG/chemistry Time Factors
Chemicals
Gold Compounds Metals, Heavy Platinum Compounds Potassium Compounds Receptors, IgG platinum chloride Mercuric Chloride Muramidase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Sun Peter D
Structural Biology Section, Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, 12441 Parklawn Drive, Rockville, MD 20852, USA. [email protected]
Radaev Sergei
Kattah Michael
Article Info
Journal
Acta crystallographica. Section D, Biological crystallography
Abbr.
Acta Crystallogr D Biol Crystallogr
ISSN
0907-4449
Published
2002-07-00
Epub
2002-00-20
Pages
1092-8
Language
English
Region
United States
NLM ID
9305878
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]