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PMID: 12186655 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data.

Genome biology ·Vol. 3 ·No. 8 ·2002-07-15 ·Pages SOFTWARE0003

Saal LH, Troein C, Vallon-Christersson J, Gruvberger S, Borg A, Peterson C

Abstract

The microarray technique requires the organization and analysis of vast amounts of data. These data include information about the samples hybridized, the hybridization images and their extracted data matrices, and information about the physical array, the features and reporter molecules. We present a web-based customizable bioinformatics solution called BioArray Software Environment (BASE) for the management and analysis of all areas of microarray experimentation. All software necessary to run a local server is freely available.

MeSH Terms
Database Management Systems/statistics & numerical data,trends Internet/statistics & numerical data,trends Oligonucleotide Array Sequence Analysis/methods,statistics & numerical data,trends Software/trends
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Saal Lao H
Complex Systems Division, Department of Theoretical Physics, Lund University, SE-22362 Lund, Sweden.
Troein Carl
Vallon-Christersson Johan
Gruvberger Sofia
Borg Ake
Peterson Carsten
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Article Info
Journal
Genome biology
Abbr.
Genome Biol
ISSN
1474-760X
DOI
10.1186/gb-2002-3-8-software0003
Published
2002-07-15
Epub
2002-00-15
Pages
SOFTWARE0003
Language
English
Region
England
NLM ID
100960660
PMCID
PMC139402
Subset
IM
External Links
PubMed source DOI: 10.1186/gb-2002-3-8-software0003 PMC Full Text View journal details
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