OrthoGUI: graphical presentation of Orthostrapper results.

Bioinformatics (Oxford, England) ·Vol. 18 ·No. 9 ·2002-09-00 ·Pages 1272-3

Hollich V, Storm CE, Sonnhammer EL

Abstract

Orthostrapper is a program that calculates orthology support values for pairs of sequences in a multiple alignment (Storm and Sonnhammer, Bioinformatics, 18, 92-99, 2002). Here we present OrthoGUI, a web interface and display tool for Orthostrapper analysis. OrthoGUI visualizes the Orthostrapper output in both tabular and tree representations, and can also apply a clustering algorithm to identify groups of multiple orthologs, which are indicated by colour coding. http://www.cgb.ki.se/OrthoGUI CONTACT: [email protected]

MeSH Terms

ATP-Binding Cassette Transporters/genetics,metabolism Adenosine Triphosphate/metabolism Algorithms Computer Graphics Data Display Databases, Protein Humans Information Storage and Retrieval/methods Internet Protein Binding/genetics Sensitivity and Specificity Sequence Alignment/methods Sequence Analysis, Protein/methods Sequence Homology Species Specificity User-Computer Interface

Chemicals

ATP-Binding Cassette Transporters Adenosine Triphosphate

Authors & Affiliations

3 authors, click to expand affiliations / ORCID

Hollich Volker

Center for Genomics and Bioinformatics, Karolinska Institutet, SE-171 77 Stockholm, Sweden.

Storm Christian E V

Sonnhammer Erik L L

Article Info

Journal

Bioinformatics (Oxford, England)

Abbr.

Bioinformatics

ISSN

1367-4803

DOI

10.1093/bioinformatics/18.9.1272

Published

2002-09-00

Pages

1272-3

Language

English

Region

England

NLM ID

9808944

Subset

External Links

PubMed source DOI: 10.1093/bioinformatics/18.9.1272 View journal details

Analysis Services

OrthoGUI: graphical presentation of Orthostrapper results.

Contact

WeChat Official Account