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PMID: 12386114 Published · ppublish English Evaluation Study Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Methods for semi-automated indexing for high precision information retrieval.

Journal of the American Medical Informatics Association : JAMIA ·Vol. 9 ·No. 6 ·2002-00-00 ·Pages 637-52

Berrios DC, Cucina RJ, Fagan LM

Abstract

To evaluate a new system, ISAID (Internet-based Semi-automated Indexing of Documents), and to generate textbook indexes that are more detailed and more useful to readers. Pilot evaluation: simple, nonrandomized trial comparing ISAID with manual indexing methods. Methods evaluation: randomized, cross-over trial comparing three versions of ISAID and usability survey. Pilot evaluation: two physicians. Methods evaluation: twelve physicians, each of whom used three different versions of the system for a total of 36 indexing sessions. Total index term tuples generated per document per minute (TPM), with and without adjustment for concordance with other subjects; inter-indexer consistency; ratings of the usability of the ISAID indexing system. Compared with manual methods, ISAID decreased indexing times greatly. Using three versions of ISAID, inter-indexer consistency ranged from 15% to 65% with a mean of 41%, 31%, and 40% for each of three documents. Subjects using the full version of ISAID were faster (average TPM: 5.6) and had higher rates of concordant index generation. There were substantial learning effects, despite our use of a training/run-in phase. Subjects using the full version of ISAID were much faster by the third indexing session (average TPM: 9.1). There was a statistically significant increase in three-subject concordant indexing rate using the full version of ISAID during the second indexing session (p < 0.05). Users of the ISAID indexing system create complex, precise, and accurate indexing for full-text documents much faster than users of manual methods. Furthermore, the natural language processing methods that ISAID uses to suggest indexes contributes substantially to increased indexing speed and accuracy.

MeSH Terms
Abstracting and Indexing/methods Attitude to Computers Consumer Behavior Electronic Data Processing Information Storage and Retrieval Surveys and Questionnaires Textbooks as Topic User-Computer Interface
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Berrios Daniel C
Stanford Medical Informatics, Stanford University, Stanford, California 94035, USA. [email protected]
Cucina Russell J
Fagan Lawrence M
References (20)
20 references, click to expand
  1. Knowledge requirements for automated inference of medical textbook markup.
    Proc AMIA Symp. 1999;:676-80 PMID: 10566445
  2. Generic queries for meeting clinical information needs.
    Bull Med Libr Assoc. 1993 Apr;81(2):195-206 PMID: 8472005
  3. Analysis of questions asked by family doctors regarding patient care.
    BMJ. 1999 Aug 7;319(7206):358-61 PMID: 10435959
  4. Metaphrase: an aid to the clinical conceptualization and formalization of patient problems in healthcare enterprises.
    Methods Inf Med. 1998 Nov;37(4-5):373-83 PMID: 9865035
  5. Extracting findings from narrative reports: software transferability and sources of physician disagreement.
    Methods Inf Med. 1998 Jan;37(1):1-7 PMID: 9550840
  6. Identification of findings suspicious for breast cancer based on natural language processing of mammogram reports.
    Proc AMIA Annu Fall Symp. 1997;:829-33 PMID: 9357741
  7. Dynamic organization of search results using the UMLS.
    Proc AMIA Annu Fall Symp. 1997;:480-4 PMID: 9357672
  8. Identification of suspected tuberculosis patients based on natural language processing of chest radiograph reports.
    Proc AMIA Annu Fall Symp. 1996;:542-6 PMID: 8947725
  9. Answering clinical questions.
    J Fam Pract. 1996 Aug;43(2):140-4 PMID: 8708623
  10. Contextual models of clinical publications for enhancing retrieval from full-text databases.
    Proc Annu Symp Comput Appl Med Care. 1995;:851-7 PMID: 8563412
  11. Information needs of health care professionals in an AIDS outpatient clinic as determined by chart review.
    J Am Med Inform Assoc. 1994 Sep-Oct;1(5):395-403 PMID: 7850563
  12. Automated indexing for full text information retrieval.
    Proc AMIA Symp. 2000;:71-5 PMID: 11079847
  13. A broad-coverage natural language processing system.
    Proc AMIA Symp. 2000;:270-4 PMID: 11079887
  14. A taxonomy of generic clinical questions: classification study.
    BMJ. 2000 Aug 12;321(7258):429-32 PMID: 10938054
  15. Empirical formulation of a generic query set for clinical information retrieval systems.
    Stud Health Technol Inform. 2001;84(Pt 1):181-5 PMID: 11604729
  16. The hepatitis knowledge base. A prototype information transfer system.
    Ann Intern Med. 1980 Jul;93(1 Pt 2):169-81 PMID: 7416656
  17. Indexing consistency in MEDLINE.
    Bull Med Libr Assoc. 1983 Apr;71(2):176-83 PMID: 6344946
  18. Information needs in office practice: are they being met?
    Ann Intern Med. 1985 Oct;103(4):596-9 PMID: 4037559
  19. Expanding the concept of medical information: an observational study of physicians' information needs.
    Comput Biomed Res. 1992 Apr;25(2):181-200 PMID: 1582194
  20. The NLM Indexing Initiative.
    Proc AMIA Symp. 2000;:17-21 PMID: 11079836
Article Info
Journal
Journal of the American Medical Informatics Association : JAMIA
Abbr.
J Am Med Inform Assoc
ISSN
1067-5027
Published
2002-00-00
Pages
637-52
Language
English
Region
England
NLM ID
9430800
PMCID
PMC349380
Subset
IM
Analysis Services
Analysis Services

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