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PMID: 12556503 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Yeast DNA polymerase zeta is an efficient extender of primer ends opposite from 7,8-dihydro-8-Oxoguanine and O6-methylguanine.

Molecular and cellular biology ·Vol. 23 ·No. 4 ·2003-02-00 ·Pages 1453-9

Haracska L, Prakash S, Prakash L

Abstract

Genetic studies in Saccharomyces cerevisiae have indicated the requirement of DNA polymerase (Pol) zeta for mutagenesis induced by UV light and by other DNA damaging agents. However, on its own, Pol zeta is highly inefficient at replicating through DNA lesions; rather, it promotes their mutagenic bypass by extending from the nucleotide inserted opposite the lesion by another DNA polymerase. So far, such a role for Pol zeta has been established for cyclobutane pyrimidine dimers, (6-4) dipyrimidine photoproducts, and abasic sites. Here, we examine whether Pol zeta can replicate through the 7,8-dihydro-8-oxoguanine (8-oxoG) and O(6)-methylguanine (m6G) lesions. We chose these two lesions for this study because the replicative polymerase, Pol delta, can replicate through them, albeit weakly. We found that Pol zeta is very inefficient at inserting nucleotides opposite both these lesions, but it can efficiently extend from the nucleotides inserted opposite them by Pol delta. Also, the most efficient bypass of 8-oxoG and m6G lesions occurs when Pol delta is combined with Pol zeta, indicating a role for Polzeta in extending from the nucleotides inserted opposite these lesions by Pol delta. Thus, Pol zeta is a highly specialized polymerase that can proficiently extend from the primer ends opposite DNA lesions, irrespective of their degree of geometric distortion. Pol zeta, however, is unusually sensitive to geometric distortion of the templating residue, as it is highly inefficient at incorporating nucleotides even opposite the moderately distorting 8-oxoG and m6G lesions.

MeSH Terms
Base Sequence DNA Primers DNA Repair/physiology DNA Replication DNA-Directed DNA Polymerase/genetics,metabolism Guanine/analogs & derivatives,metabolism Kinetics Molecular Sequence Data Saccharomyces cerevisiae/genetics,metabolism Saccharomyces cerevisiae Proteins/genetics,metabolism Substrate Specificity
Chemicals
7,8-dihydro-8-oxoguanine DNA Primers Saccharomyces cerevisiae Proteins Guanine O-(6)-methylguanine DNA polymerase zeta DNA-Directed DNA Polymerase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Haracska Lajos
Sealy Center for Molecular Science, University of Texas Medical Branch, Galveston, Texas 77555-1061, USA.
Prakash Satya
Prakash Louise
References (22)
22 references, click to expand
  1. Gel fidelity assay measuring nucleotide misinsertion, exonucleolytic proofreading, and lesion bypass efficiencies.
    Methods Enzymol. 1995;262:232-56 PMID: 8594351
  2. Ultraviolet hypermutability of a shuttle vector propagated in xeroderma pigmentosum variant cells.
    J Invest Dermatol. 1993 Nov;101(5):744-8 PMID: 8228338
  3. Identification of APN2, the Saccharomyces cerevisiae homolog of the major human AP endonuclease HAP1, and its role in the repair of abasic sites.
    Genes Dev. 1998 Oct 1;12(19):3137-43 PMID: 9765213
  4. Efficient bypass of a thymine-thymine dimer by yeast DNA polymerase, Poleta.
    Science. 1999 Feb 12;283(5404):1001-4 PMID: 9974380
  5. The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase eta.
    Nature. 1999 Jun 17;399(6737):700-4 PMID: 10385124
  6. hRAD30 mutations in the variant form of xeroderma pigmentosum.
    Science. 1999 Jul 9;285(5425):263-5 PMID: 10398605
  7. Fidelity of human DNA polymerase eta.
    J Biol Chem. 2000 Mar 17;275(11):7447-50 PMID: 10713043
  8. Accuracy of thymine-thymine dimer bypass by Saccharomyces cerevisiae DNA polymerase eta.
    Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3094-9 PMID: 10725365
  9. Evidence for a second function for Saccharomyces cerevisiae Rev1p.
    Mol Microbiol. 2000 Aug;37(3):549-54 PMID: 10931348
  10. Efficient and accurate replication in the presence of 7,8-dihydro-8-oxoguanine by DNA polymerase eta.
    Nat Genet. 2000 Aug;25(4):458-61 PMID: 10932195
  11. Eukaryotic polymerases iota and zeta act sequentially to bypass DNA lesions.
    Nature. 2000 Aug 31;406(6799):1015-9 PMID: 10984059
  12. Replication past O(6)-methylguanine by yeast and human DNA polymerase eta.
    Mol Cell Biol. 2000 Nov;20(21):8001-7 PMID: 11027270
  13. Requirement of DNA polymerase eta for error-free bypass of UV-induced CC and TC photoproducts.
    Mol Cell Biol. 2001 Jan;21(1):185-8 PMID: 11113193
  14. Role of DNA polymerase eta in the bypass of a (6-4) TT photoproduct.
    Mol Cell Biol. 2001 May;21(10):3558-63 PMID: 11313481
  15. Roles of yeast DNA polymerases delta and zeta and of Rev1 in the bypass of abasic sites.
    Genes Dev. 2001 Apr 15;15(8):945-54 PMID: 11316789
  16. Accuracy of lesion bypass by yeast and human DNA polymerase eta.
    Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8355-60 PMID: 11459975
  17. Lesion bypass in yeast cells: Pol eta participates in a multi-DNA polymerase process.
    EMBO J. 2002 Jul 15;21(14):3881-7 PMID: 12110599
  18. Translesion DNA synthesis in eukaryotes: a one- or two-polymerase affair.
    Genes Dev. 2002 Aug 1;16(15):1872-83 PMID: 12154119
  19. Base mispair extension kinetics. Comparison of DNA polymerase alpha and reverse transcriptase.
    J Biol Chem. 1990 Feb 5;265(4):2338-46 PMID: 1688852
  20. Biochemical basis of DNA replication fidelity.
    Crit Rev Biochem Mol Biol. 1993;28(2):83-126 PMID: 8485987
  21. Evidence from mutation spectra that the UV hypermutability of xeroderma pigmentosum variant cells reflects abnormal, error-prone replication on a template containing photoproducts.
    Mol Cell Biol. 1993 Jul;13(7):4276-83 PMID: 8321229
  22. DNA polymerase zeta and the control of DNA damage induced mutagenesis in eukaryotes.
    Cancer Surv. 1996;28:21-31 PMID: 8977026
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
2003-02-00
Pages
1453-9
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC141155
Subset
IM
Grants
NIGMS NIH HHS · GM19261 · United States
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