Home LiteratureArticle Details
PMID: 12773621 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Ligand dynamics in a protein internal cavity.

Kriegl JM, Nienhaus K, Deng P, Fuchs J, Nienhaus GU

Abstract

We have studied the temperature dependence of the IR stretch bands of carbon monoxide (CO) in the Xe 4 internal cavity of myoglobin mutant L29W-S108L at cryogenic temperatures. Pronounced changes of band areas and positions were analyzed quantitatively by using a simple dynamic model in which CO rotation in the cavity is constrained by a static potential. The librational dynamics of the CO causes a decrease of the total spectral area. A strong local electric field splits the CO stretch absorption into a doublet, indicating that CO can assume opposite orientations in the cavity. With increasing temperature, the two peaks approach each other, because the average angle of the CO with respect to the electric field increases. A combined classical and quantum-mechanical analysis precisely reproduces the observed temperature dependencies of both spectral area and peak shifts. It yields the height of the energy barrier between the two wells associated with opposite CO orientations, V0 approximately 2 kJ/mol, and the frequency of oscillation within a well, omega approximately 25 cm(-1). The electric field in the protein cavity was estimated as 10 MV/cm.

MeSH Terms
Animals Biophysical Phenomena Biophysics Carbon Monoxide/chemistry Heme/chemistry In Vitro Techniques Models, Molecular Myoglobin/chemistry,genetics Point Mutation Protein Conformation Proteins/chemistry Quantum Theory Recombinant Proteins/chemistry,genetics Spectroscopy, Fourier Transform Infrared Static Electricity Thermodynamics
Chemicals
Myoglobin Proteins Recombinant Proteins carboxymyoglobin Heme Carbon Monoxide
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Kriegl Jan M
Department of Biophysics, University of Ulm, D-89069 Ulm, Germany.
Nienhaus Karin
Deng Pengchi
Fuchs Jochen
Nienhaus G Ulrich
References (20)
20 references, click to expand
  1. Infrared spectroscopy of photodissociated carboxymyoglobin at low temperatures.
    Proc Natl Acad Sci U S A. 1982 Jun;79(12):3744-8 PMID: 6954517
  2. The effect of ligand dynamics on heme electronic transition band III in myoglobin.
    Biophys J. 2002 Feb;82(2):1059-67 PMID: 11806945
  3. Myoglobin, a paradigm in the study of protein dynamics.
    Chemphyschem. 2002 Mar 12;3(3):249-54 PMID: 12503170
  4. Cavities in proteins: structure of a metmyoglobin-xenon complex solved to 1.9 A.
    Biochemistry. 1984 Jun 19;23(13):2849-57 PMID: 6466620
  5. Photolysis-induced structural changes in single crystals of carbonmonoxy myoglobin at 40 K.
    Nat Struct Biol. 1994 Oct;1(10):701-5 PMID: 7634074
  6. The role of cavities in protein dynamics: crystal structure of a photolytic intermediate of a mutant myoglobin.
    Proc Natl Acad Sci U S A. 2000 Feb 29;97(5):2058-63 PMID: 10681426
  7. Protein conformational relaxation and ligand migration in myoglobin: a nanosecond to millisecond molecular movie from time-resolved Laue X-ray diffraction.
    Biochemistry. 2001 Nov 20;40(46):13802-15 PMID: 11705369
  8. Ligand binding to heme proteins: II. Transitions in the heme pocket of myoglobin.
    Biophys J. 1993 Oct;65(4):1496-507 PMID: 8274643
  9. Ultrafast rotation and trapping of carbon monoxide dissociated from myoglobin.
    Nat Struct Biol. 1997 Mar;4(3):209-14 PMID: 9164462
  10. Temperature-derivative spectroscopy: a tool for protein dynamics.
    Proc Natl Acad Sci U S A. 1990 Jan;87(1):1-5 PMID: 2296572
  11. Dynamics of ligand binding to myoglobin.
    Biochemistry. 1975 Dec 2;14(24):5355-73 PMID: 1191643
  12. Structural factors controlling ligand binding to myoglobin: a kinetic hole-burning study.
    Proc Natl Acad Sci U S A. 1998 Jun 9;95(12):6762-7 PMID: 9618486
  13. Structural dynamics of myoglobin: ligand migration among protein cavities studied by Fourier transform infrared/temperature derivative spectroscopy.
    J Biol Chem. 2002 Apr 5;277(14):11636-44 PMID: 11792698
  14. Discrimination between oxygen and carbon monoxide and inhibition of autooxidation by myoglobin. Site-directed mutagenesis of the distal histidine.
    J Biol Chem. 1989 Feb 25;264(6):3057-60 PMID: 2644279
  15. Ligand binding and conformational motions in myoglobin.
    Nature. 2000 Mar 9;404(6774):205-8 PMID: 10724176
  16. Structure of a ligand-binding intermediate in wild-type carbonmonoxy myoglobin.
    Nature. 2000 Feb 24;403(6772):921-3 PMID: 10706294
  17. Ligand binding to heme proteins: the effect of light on ligand binding in myoglobin.
    Biochemistry. 1994 Nov 15;33(45):13413-30 PMID: 7947750
  18. X-ray structure determination of a metastable state of carbonmonoxy myoglobin after photodissociation.
    Proc Natl Acad Sci U S A. 1996 Jul 9;93(14):7013-6 PMID: 8692935
  19. Crystal structure of photolysed carbonmonoxy-myoglobin.
    Nature. 1994 Oct 27;371(6500):808-12 PMID: 7935843
  20. Dielectric asymmetry in the photosynthetic reaction center.
    Science. 1994 May 6;264(5160):810-6 PMID: 17794722
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2003-06-10
Epub
2003-00-28
Pages
7069-74
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC165831
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]