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PMID: 12788544 Published · ppublish English Comparative Study Journal Article

On the complete determination of biological systems.

Trends in biotechnology ·Vol. 21 ·No. 6 ·2003-06-00 ·Pages 251-4

Selinger DW, Wright MA, Church GM

Abstract

The nascent field of systems biology ambitiously proposes to integrate information from large-scale biology projects to create computational models that are, in some sense, complete. However, the details of what would constitute a complete systems-level model of an organism are far from clear. To provide a framework for this difficult question it is useful to define a model as a set of rules that maps a set of inputs (e.g. descriptions of the cell's environment) to a set of outputs (e.g. the concentrations of all its RNAs and proteins). We show how the properties of a model affect the required experimental sampling and estimate the number of experiments needed to "complete" a particular model. Based on these estimates, we suggest that the complete determination of a biological system is a concrete, achievable goal.

MeSH Terms
Cell Physiological Phenomena Combinatorial Chemistry Techniques Computer Simulation Escherichia coli/physiology Gene Expression Regulation/physiology Humans Metabolism/physiology Models, Biological Mycoplasma pneumoniae/physiology Proteome/physiology Proteomics/methods Reproducibility of Results Research Design Sensitivity and Specificity Species Specificity Systems Theory
Chemicals
Proteome
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Selinger Douglas W
Harvard Medical School, Department of Genetics, 200 Longwood Ave, Boston, MA 02115, USA.
Wright Matthew A
Church George M
Article Info
Journal
Trends in biotechnology
Abbr.
Trends Biotechnol
ISSN
0167-7799
Published
2003-06-00
Pages
251-4
Language
English
Region
England
NLM ID
8310903
Subset
IM
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