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PMID: 12879310 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Complementary DNA sequences encoding the rat MHC class II RT1-Bu and RT1-Du alpha and beta chains.

Immunogenetics ·Vol. 55 ·No. 5 ·2003-08-00 ·Pages 344-50

Easterfield AJ, Bradley JA, Bolton EM

Abstract

The rat major histocompatibility complex loci RT1-B and RT1-D are equivalent to the human leucocyte antigens HLA-DQ and HLA-DR respectively. Here we describe the complementary DNA (cDNA) sequence encoding the alpha and beta chains of both the RT1-B and RT1-D locus genes of the rat RT1u haplotype. We have found entire sequence identity between five different inbred rat strains of the RT1u haplotype, which differs from previously published, incomplete sequences. This information is of considerable value for experimental studies of transplantation immunity and autoimmune disease.

MeSH Terms
Animals Base Sequence DNA, Complementary Histocompatibility Antigens/genetics Histocompatibility Antigens Class II/genetics Molecular Sequence Data Polymerase Chain Reaction Rats
Chemicals
DNA, Complementary Histocompatibility Antigens Histocompatibility Antigens Class II histocompatibility antigens RT, rat
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Easterfield Alistair J
Department of Surgery, University of Cambridge School of Clinical Medicine, Box 202, Addenbrooke's Hospital, Cambridge, CB2 2QQ, UK.
Bradley J Andrew
Bolton Eleanor M
References (22)
22 references, click to expand
  1. The spontaneously diabetic Wistar rat. Metabolic and morphologic studies.
    Diabetes. 1977 Feb;26(2):100-12 PMID: 320072
  2. A comparison of immune responses against AG-B and non-AG-B antigens, presented alone or together.
    Transplantation. 1977 Jun;23(6):470-8 PMID: 17185
  3. Unaltered class II histocompatibility antigens and pathogenesis of IDDM in BB rats.
    Diabetes. 1989 Feb;38(2):267-71 PMID: 2464510
  4. Polymorphism of the class II gene of rat major histocompatibility complex, RT1: partial sequence comparison of the first domain of the RT1.B beta 1 alleles.
    Immunogenetics. 1991;33(5-6):399-403 PMID: 1904838
  5. Cytogenetic orientation of the rat major histocompatibility complex (MHC) on chromosome 20.
    Immunogenetics. 1998;47(2):166-9 PMID: 9396863
  6. Complete cDNA sequence coding for the MHC class II RT1.B alpha chain of the Lewis rat.
    Nucleic Acids Res. 1989 May 25;17(10):3985 PMID: 2499874
  7. Nucleotide sequences of three distinct complementary DNA clones encoding rat class II major histocompatibility complex RT1.D beta-chain proteins.
    Immunogenetics. 1999 Jul;49(7-8):735-7 PMID: 10369938
  8. The mechanism of graft rejection and the concept of antigenic strength.
    Scand J Immunol. 1981 Dec;14(6):687-91 PMID: 6805070
  9. Complete coding nucleotide sequence of cDNA for the class II RT1.B beta I chain of the Lewis rat.
    Biochim Biophys Acta. 1991 Jul 23;1089(3):414-6 PMID: 1859846
  10. Sequence of a cDNA coding for a rat class II A alpha chain: extensive DNA and protein sequence identity to H-2 A alpha and HLA-DC1 alpha chains.
    Immunogenetics. 1984;19(1):53-62 PMID: 6319276
  11. Limited polymorphism in the first domain of the rat MHC class II RT1-D molecule.
    Immunogenetics. 1998 Oct;48(5):344-9 PMID: 9745012
  12. BB-DR/Edinburgh: a lymphopenic, non-diabetic subline of BB rats.
    Immunology. 1993 Feb;78(2):318-28 PMID: 8097184
  13. The class II genes of the rat MHC.
    J Immunol. 1989 May 1;142(9):3268-74 PMID: 2496165
  14. Immune response genes controlling responsiveness to major transplantation antigens. Specific major histocompatibility complex-linked defect for antibody responses to class I alloantigens.
    J Exp Med. 1982 Jan 1;155(1):303-20 PMID: 6172542
  15. DNA sequence analysis of the rat RT1.B alpha gene.
    Immunogenetics. 1987;26(1-2):56-62 PMID: 3610254
  16. Spontaneous diabetes mellitus syndrome in the rat. I. Association with the major histocompatibility complex.
    J Exp Med. 1981 Oct 1;154(4):1237-42 PMID: 7026724
  17. Properties of inbred strains and outbred stocks, with special reference to toxicity testing.
    J Toxicol Environ Health. 1979 Jan;5(1):53-68 PMID: 423306
  18. The rat MHC and cystathionine beta-synthase gene are syntenic on chromosome 20.
    Immunogenetics. 1990;31(4):271-4 PMID: 2329008
  19. Molecular characterization of MHC class II antigens (beta 1 domain) in the BB diabetes-prone and -resistant rat.
    Immunogenetics. 1989;29(4):231-4 PMID: 2784784
  20. Isolation and characterization of a cDNA clone for the MHC class II chain RT1.Du alpha of the diabetic BB rat.
    Immunogenetics. 1985;22(6):665-71 PMID: 3865897
  21. The complete sequence of the MHC class II chain RT.1D alpha u of the diabetic BB rat: mRNA levels of RT1.D alpha in lymphocytes.
    Nucleic Acids Res. 1987 Dec 23;15(24):10551-67 PMID: 3122183
  22. A recombinant in the major histocompatibility complex of the rat.
    Nature. 1977 Mar 24;266(5600):362-4 PMID: 859601
Article Info
Journal
Immunogenetics
Abbr.
Immunogenetics
ISSN
0093-7711
Published
2003-08-00
Epub
2003-00-18
Pages
344-50
Language
English
Region
United States
NLM ID
0420404
Subset
IM
Databases
GENBANK
AJ554214, AJ554215, AJ554216
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