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PMID: 12912836 Published · ppublish English Comparative Study Evaluation Study Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S. Validation Study

Rapid classification of a protein fold family using a statistical analysis of dipolar couplings.

Bioinformatics (Oxford, England) ·Vol. 19 ·No. 12 ·2003-08-12 ·Pages 1549-55

Valafar H, Prestegard JH

Abstract

One of the primary aims of the structural genomics initiative is the determination of representative structures from each protein fold family. Given this objective, it is important to rapidly identify proteins that belong to a family that is already well populated (so they can be eliminated from further studies), or more importantly identify proteins that represent new families of fold. A method for rapid classification to a fold family by the statistical analyses of unassigned the (15)N-(1)H residual dipolar couplings is presented. The required NMR data can be quickly acquired and analyzed. Using this method, structure determination efforts can be focused on more unique and interesting structures, and the overall efficiency in the construction of an information-rich library can be increased.

MeSH Terms
Algorithms Computer Simulation Databases, Protein Magnetic Resonance Spectroscopy/methods Models, Molecular Protein Folding Proteins/chemistry,classification Quantitative Structure-Activity Relationship Sequence Alignment/methods Sequence Analysis, Protein/methods
Chemicals
Proteins
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Valafar Homayoun
Southeast Collaboratory for Structural Genomics Complex Carbohydrate Research Center, University of Georgia, 220 Riverbend Road, Athens, GA 30602, USA.
Prestegard James H
Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4803
Published
2003-08-12
Pages
1549-55
Language
English
Region
England
NLM ID
9808944
Subset
IM
Grants
NIGMS NIH HHS · GM 062407 · United States
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