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PMID: 1328477 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Phylogenetic classification of human papillomaviruses: correlation with clinical manifestations.

The Journal of general virology ·Vol. 73 ( Pt 10) ·1992-10-00 ·Pages 2653-60

Van Ranst M, Kaplan JB, Burk RD

Abstract

Human papillomaviruses (HPVs) are a heterogeneous group of small dsDNA viruses which cause a variety of proliferative epithelial lesions at specific anatomical sites. Although more than 65 different virus types have been cloned and characterized, no uniform classification system exists. In order to classify HPV DNA types, phylogenetic trees were constructed based on nucleotide sequence alignments using parsimony and distance matrix algorithms. The resulting phylogenetic trees provide a classification of the HPVs into specific groups encompassing the known tissue tropism and oncogenic potential of each HPV type. The implications of a phylogenetic taxonomy on the diagnostic detection of HPVs and the concept of different HPV species are discussed.

MeSH Terms
Algorithms Amino Acid Sequence DNA, Viral/genetics Humans Molecular Sequence Data Oncogene Proteins, Viral/classification,genetics Open Reading Frames Organ Specificity Papillomaviridae/classification,genetics,pathogenicity Phylogeny Sequence Alignment Sequence Analysis, DNA Tumor Virus Infections/genetics,pathology Viral Proteins/classification,genetics
Chemicals
DNA, Viral Oncogene Proteins, Viral Viral Proteins
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Van Ranst M
Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York 10461.
Kaplan J B
Burk R D
Article Info
Journal
The Journal of general virology
Abbr.
J Gen Virol
ISSN
0022-1317
Published
1992-10-00
Pages
2653-60
Language
English
Region
England
NLM ID
0077340
Subset
IM
Grants
NCI NIH HHS · 5P30CA13330 · United States
Databases
GENBANK
D90261, D90262, D90263, D90264, K02718, L07668, L07669, L07670, L07671, L07672, L07673, M12737, M14119, M22961, M32305, M73236, V01116, X00203, X55964, X55965, X62843
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