Home LiteratureArticle Details
PMID: 14615583 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

On the relation between fluctuation and response in biological systems.

Sato K, Ito Y, Yomo T, Kaneko K

Abstract

A general relationship between fluctuation and response in a biological system is presented. The fluctuation is given by the variance of some quantity, whereas the response is given as the average change of that quantity for a given parameter change. We propose a relationship where the two are proportional, in a similar way to the fluctuation-dissipation theorem in physics. By studying an evolution experiment where fluorescence of protein in bacteria increases, we confirm our relation by observing a positive correlation between the speed of fluorescence evolution and the phenotypic fluctuation of the fluorescence over clone bacteria. The generality of the relationship as well as its relevance to evolution is discussed.

MeSH Terms
Biological Evolution Biophysical Phenomena Biophysics Directed Molecular Evolution Escherichia coli/genetics,metabolism Green Fluorescent Proteins Luminescent Proteins/genetics,metabolism Models, Biological Mutation Recombinant Proteins/genetics,metabolism
Chemicals
Luminescent Proteins Recombinant Proteins Green Fluorescent Proteins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Sato Katsuhiko
Department of Pure and Applied Sciences, University of Tokyo, Komaba, Meguro-ku, Tokyo 153-8902, Japan.
Ito Yoichiro
Yomo Tetsuya
Kaneko Kunihiko
References (13)
13 references, click to expand
  1. Noise-based switches and amplifiers for gene expression.
    Proc Natl Acad Sci U S A. 2000 Feb 29;97(5):2075-80 PMID: 10681449
  2. Single-molecule analysis of chemotactic signaling in Dictyostelium cells.
    Science. 2001 Oct 26;294(5543):864-7 PMID: 11679673
  3. Stochastic gene expression in a single cell.
    Science. 2002 Aug 16;297(5584):1183-6 PMID: 12183631
  4. Intrinsic and extrinsic contributions to stochasticity in gene expression.
    Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12795-800 PMID: 12237400
  5. Recursiveness, switching, and fluctuations in a replicating catalytic network.
    Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Sep;68(3 Pt 1):031909 PMID: 14524805
  6. The effect of field fluctuation on a macromolecular system.
    J Theor Biol. 1975 Jul;52(1):175-86 PMID: 1152482
  7. Rapid protein-folding assay using green fluorescent protein.
    Nat Biotechnol. 1999 Jul;17(7):691-5 PMID: 10404163
  8. Solubility of artificial proteins with random sequences.
    FEBS Lett. 1996 Mar 11;382(1-2):21-5 PMID: 8612755
  9. Simultaneous observation of individual ATPase and mechanical events by a single myosin molecule during interaction with actin.
    Cell. 1998 Jan 23;92(2):161-71 PMID: 9458041
  10. Characterization of soluble artificial proteins with random sequences.
    FEBS Lett. 1998 Jan 9;421(2):147-51 PMID: 9468296
  11. Nonadditivity of mutational effects on the properties of catalase I and its application to efficient directed evolution.
    Protein Eng. 1998 Sep;11(9):789-95 PMID: 9796828
  12. Native protein fluctuations: the conformational-motion temperature and the inverse correlation of protein flexibility with protein stability.
    J Biomol Struct Dyn. 1998 Oct;16(2):397-411 PMID: 9833677
  13. Non-genetic individuality: chance in the single cell.
    Nature. 1976 Aug 5;262(5568):467-71 PMID: 958399
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2003-11-25
Epub
2003-00-13
Pages
14086-90
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC283550
Subset
IM
Grants
NCIPC CDC HHS · U17 CE002006 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]