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PMID: 14681445 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

WormBase: a multi-species resource for nematode biology and genomics.

Nucleic acids research ·Vol. 32 ·No. Database issue ·2004-01-01 ·Pages D411-7

Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD

Abstract

WormBase (http://www.wormbase.org/) is the central data repository for information about Caenorhabditis elegans and related nematodes. As a model organism database, WormBase extends beyond the genomic sequence, integrating experimental results with extensively annotated views of the genome. The WormBase Consortium continues to expand the biological scope and utility of WormBase with the inclusion of large-scale genomic analyses, through active data and literature curation, through new analysis and visualization tools, and through refinement of the user interface. Over the past year, the nearly complete genomic sequence and comparative analyses of the closely related species Caenorhabditis briggsae have been integrated into WormBase, including gene predictions, ortholog assignments and a new synteny viewer to display the relationships between the two species. Extensive site-wide refinement of the user interface now provides quick access to the most frequently accessed resources and a consistent browsing experience across the site. Unified single-page views now provide complete summaries of commonly accessed entries like genes. These advances continue to increase the utility of WormBase for C.elegans researchers, as well as for those researchers exploring problems in functional and comparative genomics in the context of a powerful genetic system.

MeSH Terms
Animals Caenorhabditis/genetics Caenorhabditis elegans/genetics Computational Biology Databases, Genetic Genomics Information Storage and Retrieval Internet User-Computer Interface
Authors & Affiliations
30 authors, click to expand affiliations / ORCID
Harris Todd W
Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA. [email protected]
Chen Nansheng
Cunningham Fiona
Tello-Ruiz Marcela
Antoshechkin Igor
Bastiani Carol
Bieri Tamberlyn
Blasiar Darin
Bradnam Keith
Chan Juancarlos
Chen Chao-Kung
Chen Wen J
Davis Paul
Kenny Eimear
Kishore Ranjana
Lawson Daniel
Lee Raymond
Muller Hans-Michael
Nakamura Cecilia
Ozersky Philip
Petcherski Andrei
Rogers Anthony
Sabo Aniko
Schwarz Erich M
Van Auken Kimberly
Wang Qinghua
Durbin Richard
Spieth John
Sternberg Paul W
Stein Lincoln D
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2004-01-01
Pages
D411-7
Language
English
Region
England
NLM ID
0411011
PMCID
PMC308800
Subset
IM
Grants
NHGRI NIH HHS · P41 HG002223 · United States
NHGRI NIH HHS · P41-HG02223 · United States
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