Home LiteratureArticle Details
PMID: 14681453 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The aMAZE LightBench: a web interface to a relational database of cellular processes.

Nucleic acids research ·Vol. 32 ·No. Database issue ·2004-01-01 ·Pages D443-8

Lemer C, Antezana E, Couche F, Fays F, Santolaria X, Janky R, Deville Y, Richelle J, Wodak SJ

Abstract

The aMAZE LightBench (http://www.amaze.ulb. ac.be/) is a web interface to the aMAZE relational database, which contains information on gene expression, catalysed chemical reactions, regulatory interactions, protein assembly, as well as metabolic and signal transduction pathways. It allows the user to browse the information in an intuitive way, which also reflects the underlying data model. Moreover links are provided to literature references, and whenever appropriate, to external databases.

MeSH Terms
Biochemical Phenomena Biochemistry Cell Physiological Phenomena Computational Biology Databases, Factual Gene Expression Regulation Information Storage and Retrieval Internet Metabolism Molecular Biology Protein Binding Signal Transduction User-Computer Interface
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Lemer Christian
The aMAZE Project, SCMBB, Université libre de Bruxelles, boulevard du Triomphe CP 263, B-1050 Bruxelles, Belgium.
Antezana Erick
Couche Fabian
Fays Frédéric
Santolaria Xavier
Janky Rekin's
Deville Yves
Richelle Jean
Wodak Shoshana J
References (16)
16 references, click to expand
  1. TRANSFAC: transcriptional regulation, from patterns to profiles.
    Nucleic Acids Res. 2003 Jan 1;31(1):374-8 PMID: 12520026
  2. WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction.
    Nucleic Acids Res. 2000 Jan 1;28(1):123-5 PMID: 10592199
  3. Representing and analysing molecular and cellular function using the computer.
    Biol Chem. 2000 Sep-Oct;381(9-10):921-35 PMID: 11076023
  4. RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12.
    Nucleic Acids Res. 2001 Jan 1;29(1):72-4 PMID: 11125053
  5. From molecular activities and processes to biological function.
    Brief Bioinform. 2001 Mar;2(1):81-93 PMID: 11465065
  6. The KEGG databases at GenomeNet.
    Nucleic Acids Res. 2002 Jan 1;30(1):42-6 PMID: 11752249
  7. The EcoCyc Database.
    Nucleic Acids Res. 2002 Jan 1;30(1):56-8 PMID: 11752253
  8. DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions.
    Nucleic Acids Res. 2002 Jan 1;30(1):303-5 PMID: 11752321
  9. BRENDA: a resource for enzyme data and metabolic information.
    Trends Biochem Sci. 2002 Jan;27(1):54-6 PMID: 11796225
  10. MINT: a Molecular INTeraction database.
    FEBS Lett. 2002 Feb 20;513(1):135-40 PMID: 11911893
  11. TRANSPATH: an integrated database on signal transduction and a tool for array analysis.
    Nucleic Acids Res. 2003 Jan 1;31(1):97-100 PMID: 12519957
  12. BIND: the Biomolecular Interaction Network Database.
    Nucleic Acids Res. 2003 Jan 1;31(1):248-50 PMID: 12519993
  13. The InterPro Database, 2003 brings increased coverage and new features.
    Nucleic Acids Res. 2003 Jan 1;31(1):315-8 PMID: 12520011
  14. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
    Nucleic Acids Res. 2003 Jan 1;31(1):365-70 PMID: 12520024
  15. GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems.
    Comput Appl Biosci. 1993 Oct;9(5):563-71 PMID: 8293329
  16. A database for cell signaling networks.
    J Comput Biol. 1998 Winter;5(4):747-54 PMID: 10072089
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2004-01-01
Pages
D443-8
Language
English
Region
England
NLM ID
0411011
PMCID
PMC308873
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]