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PMID: 1487823 Published · ppublish English Comparative Study Journal Article Research Support, U.S. Gov't, P.H.S.

The molecular clock ticks regularly in muroid rodents and hamsters.

Journal of molecular evolution ·Vol. 35 ·No. 5 ·1992-11-00 ·Pages 377-84

O'hUigin C, Li WH

Abstract

Extensive DNA sequence data are used to compare the rates of nucleotide substitution in the mouse, rat, and hamster lineages. A relative rate test using hamster sequences as references shows that the rates of synonymous and nonsynonymous substitution in the mouse and rat lineages are nearly equal and a test using human sequences as references shows that the rates in the mouse, rat, and hamster lineages are also nearly equal. Under the assumptions that the guinea pig lineage and the myomorph (mouse, rat, and hamster) lineage diverged 70-100 million years (Myr) ago and that the rate of nucleotide substitution has been constant in all these lineages since their divergence, the date of the mouse-rat split is estimated to be between 20 and 29 Myr ago, which is considerably older than the date (approximately 12 Myr) suggested by available rodent fossils and considerably younger than the date (approximately 35 Myr) suggested by Wilson and colleagues. The murid-hamster split is estimated to be 1.6 times older than the mouse-rat split.

MeSH Terms
Animals Biological Evolution Cricetinae/genetics DNA/genetics Genetic Variation Humans Mice Muridae/classification,genetics Mutation Phylogeny Rats Sequence Homology, Nucleic Acid Time Factors
Chemicals
DNA
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
O'hUigin C
Center for Demographic and Population Genetics, University of Texas, Houston 77225.
Li W H
References (28)
28 references, click to expand
  1. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes.
    Mol Biol Evol. 1985 Mar;2(2):150-74 PMID: 3916709
  2. The pattern of mammalian evolution and the relative rate of molecular evolution.
    Genetics. 1990 Jan;124(1):165-73 PMID: 2307352
  3. The relative rate of DNA evolution in primates.
    Mol Biol Evol. 1991 Jan;8(1):115-27 PMID: 2002761
  4. A pseudo-exon in the functional human alpha A-crystallin gene.
    Nature. 1989 Feb 23;337(6209):752-4 PMID: 2918909
  5. The molecular clock runs more slowly in man than in apes and monkeys.
    Nature. 1987 Mar 5-11;326(6108):93-6 PMID: 3102974
  6. DNA microenvironments and the molecular clock.
    J Mol Evol. 1989 Nov;29(5):407-11 PMID: 2515290
  7. An evaluation of the molecular clock hypothesis using mammalian DNA sequences.
    J Mol Evol. 1987;25(4):330-42 PMID: 3118047
  8. DNA/DNA HYBRIDIZATION STUDIES OF MUROID RODENTS: SYMMETRY AND RATES OF MOLECULAR EVOLUTION.
    Evolution. 1983 Sep;37(5):1034-1051 PMID: 28563545
  9. Glutamine synthetase gene evolution: a good molecular clock.
    Proc Natl Acad Sci U S A. 1991 Jan 15;88(2):522-6 PMID: 1671172
  10. Evidence for higher rates of nucleotide substitution in rodents than in man.
    Proc Natl Acad Sci U S A. 1985 Mar;82(6):1741-5 PMID: 3856856
  11. Rat serum amyloid P component. Analysis of cDNA sequence and gene expression.
    Biochem J. 1990 Sep 1;270(2):553-6 PMID: 2400402
  12. The molecular taxonomy and evolution of the guinea pig.
    J Hered. 1992 May-Jun;83(3):174-81 PMID: 1624762
  13. Molecular phylogeny of Rodentia, Lagomorpha, Primates, Artiodactyla, and Carnivora and molecular clocks.
    Proc Natl Acad Sci U S A. 1990 Sep;87(17):6703-7 PMID: 2395871
  14. DNA-DNA hybridization evidence of the rapid rate of muroid rodent DNA evolution.
    Mol Biol Evol. 1987 May;4(3):242-53 PMID: 3447010
  15. A cDNA encoding human ribosomal protein S24.
    Gene. 1990 Jul 16;91(2):293-6 PMID: 2210388
  16. The compositional distribution of coding sequences and DNA molecules in humans and murids.
    J Mol Evol. 1988;27(4):311-20 PMID: 3146641
  17. Non-Darwinian evolution.
    Science. 1969 May 16;164(3881):788-98 PMID: 5767777
  18. Rate of fixation of nucleotide substitutions in evolution.
    Nature. 1969 Oct 11;224(5215):149-54 PMID: 5343515
  19. Sequences of primate insulin genes support the hypothesis of a slower rate of molecular evolution in humans and apes than in monkeys.
    Mol Biol Evol. 1992 Mar;9(2):193-203 PMID: 1560757
  20. Rates of DNA sequence evolution differ between taxonomic groups.
    Science. 1986 Mar 21;231(4744):1393-8 PMID: 3082006
  21. Cloning of the human serotonin 5-HT2 and 5-HT1C receptor subtypes.
    Biochem Biophys Res Commun. 1991 Dec 31;181(3):1469-78 PMID: 1722404
  22. The role of immunochemical differences in the phyletic development of human behavior.
    Hum Biol. 1961 May;33:131-62 PMID: 13707050
  23. Is the guinea-pig a rodent?
    Nature. 1991 Jun 20;351(6328):649-52 PMID: 2052090
  24. Primate eta-globin DNA sequences and man's place among the great apes.
    Nature. 1986 Jan 16-22;319(6050):234-8 PMID: 3945312
  25. Evolutionary rate at the molecular level.
    Nature. 1968 Feb 17;217(5129):624-6 PMID: 5637732
  26. Mouse glutamine synthetase is encoded by a single gene that can be expressed in a localized fashion.
    J Mol Biol. 1989 Jul 5;208(1):45-56 PMID: 2475638
  27. The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern.
    J Mol Evol. 1991 Jul;33(1):83-91 PMID: 1909377
  28. Biochemical evolution.
    Annu Rev Biochem. 1977;46:573-639 PMID: 409339
Article Info
Journal
Journal of molecular evolution
Abbr.
J Mol Evol
ISSN
0022-2844
Published
1992-11-00
Pages
377-84
Language
English
Region
Germany
NLM ID
0360051
Subset
IM
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