Home LiteratureArticle Details
PMID: 14990804 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

CbiZ, an amidohydrolase enzyme required for salvaging the coenzyme B12 precursor cobinamide in archaea.

Woodson JD, Escalante-Semerena JC

Abstract

The existence of a pathway for salvaging the coenzyme B(12) precursor dicyanocobinamide (Cbi) from the environment was established by genetic and biochemical means. The pathway requires the function of a previously unidentified amidohydrolase enzyme that converts adenosylcobinamide to adenosylcobyric acid, a bona fide intermediate of the de novo coenzyme B(12) biosynthetic route. The cbiZ gene of the methanogenic archaeon Methanosarcina mazei strain Göl was cloned, was overproduced in Escherichia coli, and the recombinant protein was isolated to homogeneity. HPLC, UV-visible spectroscopy, MS, and bioassay data established adenosylcobyric as the corrinoid product of the CbiZ-catalyzed reaction. Inactivation of the cbiZ gene in the extremely halophilic archaeon Halobacterium sp. strain NRC-1 blocked the ability of this archaeon to salvage Cbi. cbiZ function restored Cbi salvaging in a strain of the bacterium Salmonella enterica, whose Cbi-salvaging pathway was blocked. The salvaging of Cbi through the CbiZ enzyme appears to be an archaeal strategy because all of the genomes of B(12)-producing archaea have a cbiZ ortholog. Reasons for the evolution of two distinct pathways for Cbi salvaging in prokaryotes are discussed.

MeSH Terms
Aminohydrolases/genetics,metabolism Cobamides/metabolism Genes, Archaeal Genetic Complementation Test Halobacterium/genetics,metabolism Methanosarcina/genetics,metabolism Molecular Sequence Data Mutation Recombinant Proteins/genetics,metabolism Salmonella enterica/genetics,metabolism Species Specificity Vitamin B 12/analogs & derivatives,metabolism
Chemicals
Cobamides Recombinant Proteins cobinamide cobyric acid Aminohydrolases Vitamin B 12
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Woodson Jesse D
Department of Bacteriology, University of Wisconsin, Madison, WI 53726-4087, USA.
Escalante-Semerena Jorge C
References (27)
27 references, click to expand
  1. An in vitro reducing system for the enzymic conversion of cobalamin to adenosylcobalamin.
    J Biol Chem. 2001 Aug 24;276(34):32101-8 PMID: 11408479
  2. Three-dimensional structure of ATP:corrinoid adenosyltransferase from Salmonella typhimurium in its free state, complexed with MgATP, or complexed with hydroxycobalamin and MgATP.
    Biochemistry. 2001 Jan 16;40(2):361-74 PMID: 11148030
  3. The biosynthesis of adenosylcobalamin (vitamin B12).
    Nat Prod Rep. 2002 Aug;19(4):390-412 PMID: 12195810
  4. Biosynthesis of cobalamin (vitamin B(12)).
    Biochem Soc Trans. 2002 Aug;30(4):613-20 PMID: 12196148
  5. The ATP:Co(I)rrinoid adenosyltransferase (CobA) enzyme of Salmonella enterica requires the 2'-OH group of ATP for function and yields inorganic triphosphate as its reaction byproduct.
    J Biol Chem. 2002 Sep 6;277(36):33127-31 PMID: 12080060
  6. The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis.
    J Bacteriol. 2003 Jan;185(1):311-6 PMID: 12486068
  7. A new pathway for salvaging the coenzyme B12 precursor cobinamide in archaea requires cobinamide-phosphate synthase (CbiB) enzyme activity.
    J Bacteriol. 2003 Dec;185(24):7193-201 PMID: 14645280
  8. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  9. Transformation in restriction-deficient Salmonella typhimurium LT2.
    J Gen Microbiol. 1989 Sep;135(9):2561-7 PMID: 2697751
  10. Identification and quantitation of corrinoid precursors of cobalamin from Pseudomonas denitrificans by high-performance liquid chromatography.
    Anal Biochem. 1990 Aug 15;189(1):24-9 PMID: 2278386
  11. A bifunctional protein from Pseudomonas denitrificans carries cobinamide kinase and cobinamide phosphate guanylyltransferase activities.
    J Bacteriol. 1991 Oct;173(19):6052-7 PMID: 1655696
  12. A Salmonella typhimurium cobalamin-deficient mutant blocked in 1-amino-2-propanol synthesis.
    J Bacteriol. 1992 Apr;174(7):2138-44 PMID: 1551838
  13. The poc locus is required for 1,2-propanediol-dependent transcription of the cobalamin biosynthetic (cob) and propanediol utilization (pdu) genes of Salmonella typhimurium.
    J Bacteriol. 1992 Apr;174(7):2267-72 PMID: 1313000
  14. Purification and characterization of the bifunctional CobU enzyme of Salmonella typhimurium LT2. Evidence for a CobU-GMP intermediate.
    J Biol Chem. 1995 Oct 6;270(40):23560-9 PMID: 7559521
  15. Cobalamin (coenzyme B12): synthesis and biological significance.
    Annu Rev Microbiol. 1996;50:137-81 PMID: 8905078
  16. Biochemistry and molecular genetics of cobalamin biosynthesis.
    Prog Nucleic Acid Res Mol Biol. 1997;56:347-84 PMID: 9187059
  17. How corrinoids are synthesized without oxygen: nature's first pathway to vitamin B12.
    Chem Biol. 1997 Sep;4(9):659-66 PMID: 9331403
  18. The complete genome sequence of the gram-positive bacterium Bacillus subtilis.
    Nature. 1997 Nov 20;390(6657):249-56 PMID: 9384377
  19. CobD, a novel enzyme with L-threonine-O-3-phosphate decarboxylase activity, is responsible for the synthesis of (R)-1-amino-2-propanol O-2-phosphate, a proposed new intermediate in cobalamin biosynthesis in Salmonella typhimurium LT2.
    J Biol Chem. 1998 Jan 30;273(5):2684-91 PMID: 9446573
  20. Three-dimensional structure of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase from Salmonella typhimurium determined to 2.3 A resolution,.
    Biochemistry. 1998 May 26;37(21):7686-95 PMID: 9601028
  21. Cobalamin (vitamin B12) biosynthesis: identification and characterization of a Bacillus megaterium cobI operon.
    Biochem J. 1998 Oct 1;335 ( Pt 1):159-66 PMID: 9742225
  22. Three-dimensional structure of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase (CobU) complexed with GMP: evidence for a substrate-induced transferase active site.
    Biochemistry. 1999 Oct 5;38(40):12995-3005 PMID: 10529169
  23. Identification of an alternative nucleoside triphosphate: 5'-deoxyadenosylcobinamide phosphate nucleotidyltransferase in Methanobacterium thermoautotrophicum delta H.
    J Bacteriol. 2000 Aug;182(15):4227-33 PMID: 10894731
  24. Reduction of Cob(III)alamin to Cob(II)alamin in Salmonella enterica serovar typhimurium LT2.
    J Bacteriol. 2000 Aug;182(15):4304-9 PMID: 10894741
  25. Analysis of the adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase (CobU) enzyme of Salmonella typhimurium LT2. Identification of residue His-46 as the site of guanylylation.
    J Biol Chem. 2000 Sep 8;275(36):27576-86 PMID: 10869342
  26. Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis.
    Nucleic Acids Res. 2000 Nov 1;28(21):4317-31 PMID: 11058132
  27. The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea.
    J Mol Microbiol Biotechnol. 2002 Jul;4(4):453-61 PMID: 12125824
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2004-03-09
Epub
2004-00-27
Pages
3591-6
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC373507
Subset
IM
Grants
NIGMS NIH HHS · R01 GM040313 · United States
NIGMS NIH HHS · R37 GM040313 · United States
NIGMS NIH HHS · GM40313 · United States
Databases
GENBANK
UNKNOWN
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]