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PMID: 15078858 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S. Review

An overview of Ensembl.

Genome research ·Vol. 14 ·No. 5 ·2004-05-00 ·Pages 925-8

Birney E, Andrews TD, Bevan P, Caccamo M, Chen Y, Clarke L, Coates G, Cuff J, Curwen V, Cutts T, Down T, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz HR, Iyer V, Jekosch K, Kahari A, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark KC, Cameron G, Durbin R, Cox A, Hubbard T, Clamp M

Abstract

Ensembl (http://www.ensembl.org/) is a bioinformatics project to organize biological information around the sequences of large genomes. It is a comprehensive source of stable automatic annotation of individual genomes, and of the synteny and orthology relationships between them. It is also a framework for integration of any biological data that can be mapped onto features derived from the genomic sequence. Ensembl is available as an interactive Web site, a set of flat files, and as a complete, portable open source software system for handling genomes. All data are provided without restriction, and code is freely available. Ensembl's aims are to continue to "widen" this biological integration to include other model organisms relevant to understanding human biology as they become available; to "deepen" this integration to provide an ever more seamless linkage between equivalent components in different species; and to provide further classification of functional elements in the genome that have been previously elusive.

MeSH Terms
Computational Biology/trends
Authors & Affiliations
48 authors, click to expand affiliations / ORCID
Birney Ewan
EMBL European Bioinformatics Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK. [email protected]
Andrews T Daniel
Bevan Paul
Caccamo Mario
Chen Yuan
Clarke Laura
Coates Guy
Cuff James
Curwen Val
Cutts Tim
Down Thomas
Eyras Eduardo
Fernandez-Suarez Xose M
Gane Paul
Gibbins Brian
Gilbert James
Hammond Martin
Hotz Hans-Rudolf
Iyer Vivek
Jekosch Kerstin
Kahari Andreas
Kasprzyk Arek
Keefe Damian
Keenan Stephen
Lehvaslaiho Heikki
McVicker Graham
Melsopp Craig
Meidl Patrick
Mongin Emmanuel
Pettett Roger
Potter Simon
Proctor Glenn
Rae Mark
Searle Steve
Slater Guy
Smedley Damian
Smith James
Spooner Will
Stabenau Arne
Stalker James
Storey Roy
Ureta-Vidal Abel
Woodwark K Cara
Cameron Graham
Durbin Richard
Cox Anthony
Hubbard Tim
Clamp Michele
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18 references, click to expand
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Article Info
Journal
Genome research
Abbr.
Genome Res
ISSN
1088-9051
Published
2004-05-00
Epub
2004-00-12
Pages
925-8
Language
English
Region
United States
NLM ID
9518021
PMCID
PMC479121
Subset
IM
Grants
Wellcome Trust · 062023 · United Kingdom
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