Abstract
A complex hierarchy of genetic interactions converts a single-celled Drosophila melanogaster egg into a multicellular embryo with 14 segments. Previously, von Dassow et al. reported that a mathematical model of the genetic interactions that defined the polarity of segments (the segment polarity network) was robust (von Dassow et al. 2000). As quantitative information about the system was unavailable, parameters were sampled randomly. A surprisingly large fraction of these parameter sets allowed the model to maintain and elaborate on the segment polarity pattern. This robustness is due to the positive feedback of gene products on their own expression, which induces individual cells in a model segment to adopt different stable expression states (bistability) corresponding to different cell types in the segment polarity pattern. A positive feedback loop will only yield multiple stable states when the parameters that describe it satisfy a particular inequality. By testing which random parameter sets satisfy these inequalities, I show that bistability is necessary to form the segment polarity pattern and serves as a strong predictor of which parameter sets will succeed in forming the pattern. Although the original model was robust to parameter variation, it could not reproduce the observed effects of cell division on the pattern of gene expression. I present a modified version that incorporates recent experimental evidence and does successfully mimic the consequences of cell division. The behavior of this modified model can also be understood in terms of bistability in positive feedback of gene expression. I discuss how this topological property of networks provides robust pattern formation and how large changes in parameters can change the specific pattern produced by a network.
MeSH Terms
Animals
Body Patterning/genetics,physiology
Computational Biology
Computer Simulation
Drosophila Proteins/metabolism
Drosophila melanogaster/embryology,metabolism
Embryo, Nonmammalian/metabolism
Gene Expression Regulation, Developmental/genetics
Homeodomain Proteins/metabolism
Likelihood Functions
Models, Biological
Proto-Oncogene Proteins/metabolism
Transcription Factors/metabolism
Wnt1 Protein
Chemicals
Drosophila Proteins
En protein, Drosophila
Homeodomain Proteins
Proto-Oncogene Proteins
Transcription Factors
Wnt1 Protein
wg protein, Drosophila
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Ingolia Nicholas T
Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts, USA.
[email protected]
Conflict of Interest
The author has declared that no conflicts of interest exist.
References (21)
21 references, click to expand
-
Bistability in the JNK cascade.
Curr Biol. 2001 Aug 7;11(15):1176-82
PMID: 11516948
-
Generating patterns from fields of cells. Examples from Drosophila segmentation.
EMBO Rep. 2001 Dec;2(12):1083-8
PMID: 11743020
-
The logical analysis of continuous, non-linear biochemical control networks.
J Theor Biol. 1973 Apr;39(1):103-29
PMID: 4741704
-
Requirements for transcriptional repression and activation by Engrailed in Drosophila embryos.
Development. 2003 Feb;130(4):729-39
PMID: 12506003
-
Divide and conquer: pattern formation in Drosophila embryonic epidermis.
Trends Genet. 2001 Oct;17(10):574-9
PMID: 11585663
-
Multistationarity, the basis of cell differentiation and memory. I. Structural conditions of multistationarity and other nontrivial behavior.
Chaos. 2001 Mar;11(1):170-179
PMID: 12779451
-
The roles of APC and Axin derived from experimental and theoretical analysis of the Wnt pathway.
PLoS Biol. 2003 Oct;1(1):E10
PMID: 14551908
-
Specifying epigenetic states with autoregulatory transcription factors.
J Theor Biol. 1994 Sep 21;170(2):175-81
PMID: 7967639
-
ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON.
Proc Natl Acad Sci U S A. 1957 Jul 15;43(7):553-66
PMID: 16590055
-
The Drosophila hedgehog gene is expressed specifically in posterior compartment cells and is a target of engrailed regulation.
Genes Dev. 1992 Dec;6(12B):2635-45
PMID: 1340474
-
Combinatorial synthesis of genetic networks.
Science. 2002 May 24;296(5572):1466-70
PMID: 12029133
-
The making of a maggot: patterning the Drosophila embryonic epidermis.
Curr Opin Genet Dev. 1994 Aug;4(4):529-34
PMID: 7950320
-
The repressor and activator forms of Cubitus interruptus control Hedgehog target genes through common generic gli-binding sites.
Development. 2000 Jul;127(14):2999-3007
PMID: 10862738
-
The segment polarity network is a robust developmental module.
Nature. 2000 Jul 13;406(6792):188-92
PMID: 10910359
-
An absolute requirement for Cubitus interruptus in Hedgehog signaling.
Development. 2001 Mar;128(5):733-42
PMID: 11171398
-
The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster.
J Theor Biol. 2003 Jul 7;223(1):1-18
PMID: 12782112
-
The Drosophila cubitus interruptus protein and its role in the wingless and hedgehog signal transduction pathways.
Mech Dev. 1995 Jul;52(1):137-50
PMID: 7577671
-
Multiple modes of engrailed regulation in the progression towards cell fate determination.
Nature. 1991 Aug 1;352(6334):404-10
PMID: 1861720
-
MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network.
Science. 2002 Aug 9;297(5583):1018-23
PMID: 12169734
-
Design and constraints of the Drosophila segment polarity module: robust spatial patterning emerges from intertwined cell state switches.
J Exp Zool. 2002 Oct 15;294(3):179-215
PMID: 12362429
-
Noise-based switches and amplifiers for gene expression.
Proc Natl Acad Sci U S A. 2000 Feb 29;97(5):2075-80
PMID: 10681449