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PMID: 15263073 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Phylogeny and diversification of the largest avian radiation.

Barker FK, Cibois A, Schikler P, Feinstein J, Cracraft J

Abstract

The order Passeriformes ("perching birds") comprises extant species diversity comparable to that of living mammals. For over a decade, a single phylogenetic hypothesis based on DNA-DNA hybridization has provided the primary framework for numerous comparative analyses of passerine ecological and behavioral evolution and for tests of the causal factors accounting for rapid radiations within the group. We report here a strongly supported phylogenetic tree based on two single-copy nuclear gene sequences for the most complete sampling of passerine families to date. This tree is incongruent with that derived from DNA-DNA hybridization, with half of the nodes from the latter in conflict and over a third of the conflicts significant as assessed under maximum likelihood. Our historical framework suggests multiple waves of passerine dispersal from Australasia into Eurasia, Africa, and the New World, commencing as early as the Eocene, essentially reversing the classical scenario of oscine biogeography. The revised history implied by these data will require reassessment of comparative analyses of passerine diversification and adaptation.

MeSH Terms
Animals Biological Evolution Genetic Variation Geography Molecular Sequence Data Nucleic Acid Hybridization Phylogeny Songbirds/classification,genetics
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Barker F Keith
Bell Museum of Natural History, University of Minnesota, 1987 Upper Buford Circle, St. Paul, 55108, USA. [email protected]
Cibois Alice
Schikler Peter
Feinstein Julie
Cracraft Joel
References (29)
29 references, click to expand
  1. Parental care and clutch sizes in North and South American birds.
    Science. 2000 Feb 25;287(5457):1482-5 PMID: 10688796
  2. Noise and incongruence: interpreting results of the incongruence length difference test.
    Mol Phylogenet Evol. 2000 Dec;17(3):401-6 PMID: 11133194
  3. Calibration of avian molecular clocks.
    Mol Biol Evol. 2001 Feb;18(2):206-13 PMID: 11158379
  4. Avian evolution, Gondwana biogeography and the Cretaceous-Tertiary mass extinction event.
    Proc Biol Sci. 2001 Mar 7;268(1466):459-69 PMID: 11296857
  5. Phylogenetics and speciation.
    Trends Ecol Evol. 2001 Jul 1;16(7):391-399 PMID: 11403872
  6. MRBAYES: Bayesian inference of phylogenetic trees.
    Bioinformatics. 2001 Aug;17(8):754-5 PMID: 11524383
  7. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach.
    Mol Biol Evol. 2002 Jan;19(1):101-9 PMID: 11752195
  8. A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens.
    Proc Biol Sci. 2002 Feb 7;269(1488):235-41 PMID: 11839192
  9. A phylogenetic hypothesis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data.
    Proc Biol Sci. 2002 Feb 7;269(1488):295-308 PMID: 11839199
  10. When does the incongruence length difference test fail?
    Mol Biol Evol. 2002 Apr;19(4):432-7 PMID: 11919284
  11. The utility of the incongruence length difference test.
    Syst Biol. 2002 Aug;51(4):625-37 PMID: 12228004
  12. Systematic affinities of the lyrebirds (Passeriformes: Menura), with a novel classification of the major groups of passerine birds.
    Mol Phylogenet Evol. 2002 Oct;25(1):53-62 PMID: 12383750
  13. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.
    Syst Biol. 2003 Oct;52(5):696-704 PMID: 14530136
  14. Cooperative breeding in oscine passerines: does sociality inhibit speciation?
    Proc Biol Sci. 2003 Nov 7;270(1530):2207-14 PMID: 14613606
  15. Global diversification rates of passerine birds.
    Proc Biol Sci. 2003 Nov 7;270(1530):2285-91 PMID: 14613616
  16. Oligocene mammals from Ethiopia and faunal exchange between Afro-Arabia and Eurasia.
    Nature. 2003 Dec 4;426(6966):549-52 PMID: 14654838
  17. Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.
    Bioinformatics. 2004 Feb 12;20(3):407-15 PMID: 14960467
  18. Congruence versus phylogenetic accuracy: revisiting the incongruence length difference test.
    Syst Biol. 2004 Feb;53(1):81-9 PMID: 14965902
  19. Molecular systematics of New World suboscine birds.
    Mol Phylogenet Evol. 2004 Jul;32(1):11-24 PMID: 15186793
  20. Tempo and mode of evolution revealed from molecular phylogenies.
    Proc Natl Acad Sci U S A. 1992 Sep 1;89(17):8322-6 PMID: 1518865
  21. Detecting shifts in diversification rates without fossils.
    Am Nat. 1998 Aug;152(2):176-87 PMID: 18811384
  22. Recent advances in South American mammalian paleontology.
    Trends Ecol Evol. 1998 Nov 1;13(11):449-54 PMID: 21238387
  23. CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.
    Evolution. 1985 Jul;39(4):783-791 PMID: 28561359
  24. EVOLUTION OF AVIAN COOPERATIVE BREEDING: COMPARATIVE TESTS OF THE NEST PREDATION HYPOTHESIS.
    Evolution. 1997 Feb;51(1):226-240 PMID: 28568805
  25. Evolutionary trees from DNA sequences: a maximum likelihood approach.
    J Mol Evol. 1981;17(6):368-76 PMID: 7288891
  26. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods.
    J Mol Evol. 1994 Sep;39(3):306-14 PMID: 7932792
  27. Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence.
    Science. 1997 Feb 21;275(5303):1109-13 PMID: 9027308
  28. Molecular systematics of tanagers (Thraupinae): evolution and biogeography of a diverse radiation of neotropical birds.
    Mol Phylogenet Evol. 1997 Dec;8(3):334-48 PMID: 9417892
  29. Evolution on a volcanic conveyor belt: using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates.
    Mol Ecol. 1998 Apr;7(4):533-45 PMID: 9628004
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2004-07-27
Epub
2004-00-19
Pages
11040-5
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC503738
Subset
IM
Databases
GENBANK
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