Home LiteratureArticle Details
PMID: 15284490 Published · ppublish English Journal Article

Rice mutant resources for gene discovery.

Plant molecular biology ·Vol. 54 ·No. 3 ·2004-02-00 ·Pages 325-34

Hirochika H, Guiderdoni E, An G, Hsing YI, Eun MY, Han CD, Upadhyaya N, Ramachandran S, Zhang Q, Pereira A, Sundaresan V, Leung H

Abstract

With the completion of genomic sequencing of rice, rice has been firmly established as a model organism for both basic and applied research. The next challenge is to uncover the functions of genes predicted by sequence analysis. Considering the amount of effort and the diversity of disciplines required for functional analyses, extensive international collaboration is needed for this next goal. The aims of this review are to summarize the current status of rice mutant resources, key tools for functional analysis of genes, and our perspectives on how to accelerate rice gene discovery through collaboration.

MeSH Terms
Databases, Genetic Ethyl Methanesulfonate/pharmacology Genes, Plant/genetics Mutagenesis/drug effects,radiation effects Mutagenesis, Insertional Mutation Oryza/genetics
Chemicals
Ethyl Methanesulfonate
Authors & Affiliations
12 authors, click to expand affiliations / ORCID
Hirochika Hirohiko
Molecular Genetics Department, National Institute of Agrobiological Sciences, Tsukuba City, Ibaraki 305-8602, Japan. [email protected]
Guiderdoni Emmanuel
An Gynheung
Hsing Yue-Ie
Eun Moo Young
Han Chang-Deok
Upadhyaya Narayana
Ramachandran Srinivasan
Zhang Qifa
Pereira Andy
Sundaresan Venkatesan
Leung Hei
References (34)
34 references, click to expand
  1. The MSP1 gene is necessary to restrict the number of cells entering into male and female sporogenesis and to initiate anther wall formation in rice.
    Plant Cell. 2003 Aug;15(8):1728-39 PMID: 12897248
  2. Genome-wide insertional mutagenesis of Arabidopsis thaliana.
    Science. 2003 Aug 1;301(5633):653-7 PMID: 12893945
  3. High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics.
    Plant J. 2004 Aug;39(3):450-64 PMID: 15255873
  4. Molecular analysis of rice plants harboring an Ac/Ds transposable element-mediated gene trapping system.
    Plant J. 1999 Sep;19(5):615-23 PMID: 10504583
  5. Frequency and pattern of transposition of the maize transposable element Ds in transgenic rice plants.
    Plant Cell Physiol. 2000 Jun;41(6):733-42 PMID: 10945343
  6. Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J. 1999 Feb 15;18(4):992-1002 PMID: 10022841
  7. Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences.
    Plant J. 2004 Jan;37(2):301-14 PMID: 14690513
  8. Plant tagnology.
    Trends Plant Sci. 1999 Mar;4(3):90-96 PMID: 10322539
  9. Early and multiple Ac transpositions in rice suitable for efficient insertional mutagenesis.
    Plant Mol Biol. 2001 May;46(2):215-27 PMID: 11442061
  10. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).
    Science. 2002 Apr 5;296(5565):92-100 PMID: 11935018
  11. Development of enhancer trap lines for functional analysis of the rice genome.
    Plant J. 2003 Aug;35(3):418-27 PMID: 12887592
  12. Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway.
    Plant Cell Rep. 2005 Mar;23(12):819-33 PMID: 15668792
  13. Large-scale identification of single-feature polymorphisms in complex genomes.
    Genome Res. 2003 Mar;13(3):513-23 PMID: 12618383
  14. Sequence and analysis of rice chromosome 4.
    Nature. 2002 Nov 21;420(6913):316-20 PMID: 12447439
  15. A draft sequence of the rice genome (Oryza sativa L. ssp. indica).
    Science. 2002 Apr 5;296(5565):79-92 PMID: 11935017
  16. Large-scale discovery of induced point mutations with high-throughput TILLING.
    Genome Res. 2003 Mar;13(3):524-30 PMID: 12618384
  17. Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall.
    Plant Physiol. 2003 Sep;133(1):73-83 PMID: 12970476
  18. The genome sequence and structure of rice chromosome 1.
    Nature. 2002 Nov 21;420(6913):312-6 PMID: 12447438
  19. Generation and analysis of end sequence database for T-DNA tagging lines in rice.
    Plant Physiol. 2003 Dec;133(4):2040-7 PMID: 14630961
  20. Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome.
    Plant Cell. 2003 Aug;15(8):1771-80 PMID: 12897251
  21. Towards an accurate sequence of the rice genome.
    Curr Opin Plant Biol. 2003 Apr;6(2):101-5 PMID: 12667864
  22. T-DNA insertional mutagenesis for functional genomics in rice.
    Plant J. 2000 Jun;22(6):561-70 PMID: 10886776
  23. T-DNA insertional mutagenesis for activation tagging in rice.
    Plant Physiol. 2002 Dec;130(4):1636-44 PMID: 12481047
  24. Contribution of the Tos17 retrotransposon to rice functional genomics.
    Curr Opin Plant Biol. 2001 Apr;4(2):118-22 PMID: 11228433
  25. Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion. Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene.
    Plant Physiol. 2001 Mar;125(3):1248-57 PMID: 11244106
  26. Seed and molecular resources for Arabidopsis.
    Plant Physiol. 2000 Dec;124(4):1477-80 PMID: 11115863
  27. Transpositional behaviour of an Ac/Ds system for reverse genetics in rice.
    Theor Appl Genet. 2003 Dec;108(1):10-24 PMID: 14513217
  28. International Rice Genome Sequencing Project: the effort to completely sequence the rice genome.
    Curr Opin Plant Biol. 2000 Apr;3(2):138-41 PMID: 10712951
  29. A fast neutron deletion mutagenesis-based reverse genetics system for plants.
    Plant J. 2001 Aug;27(3):235-42 PMID: 11532169
  30. Transposon tagging in rice.
    Plant Mol Biol. 1997 Sep;35(1-2):219-29 PMID: 9291975
  31. High-throughput isolation of Caenorhabditis elegans deletion mutants.
    Genome Res. 1999 Sep;9(9):859-67 PMID: 10508845
  32. Reprogramming of the activity of the activator/dissociation transposon family during plant regeneration in rice.
    Mol Cells. 2002 Oct 31;14(2):231-7 PMID: 12442895
  33. Ac as a tool for the functional genomics of rice.
    Plant J. 1999 Sep;19(5):605-13 PMID: 10504582
  34. High-throughput screening for induced point mutations.
    Plant Physiol. 2001 Jun;126(2):480-4 PMID: 11402178
Article Info
Journal
Plant molecular biology
Abbr.
Plant Mol Biol
ISSN
0167-4412
DOI
10.1023/B:PLAN.0000036368.74758.66
Email
[email protected]
Published
2004-02-00
Pages
325-34
Language
English
Region
Netherlands
NLM ID
9106343
Subset
IM
External Links
PubMed source DOI: 10.1023/B:PLAN.0000036368.74758.66 View journal details
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]

Copyright © 2026.Genelibs Jinan Honghui Biotechnology Co., Ltd. 鲁ICP备20007159号-2