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PMID: 15297301 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Network structures and algorithms in Bioconductor.

Bioinformatics (Oxford, England) ·Vol. 21 ·No. 1 ·2005-01-01 ·Pages 135-6

Carey VJ, Gentry J, Whalen E, Gentleman R

Abstract

In this paper, we review the central concepts and implementations of tools for working with network structures in Bioconductor. Interfaces to open source resources for visualization (AT&T Graphviz) and network algorithms (Boost) have been developed to support analysis of graphical structures in genomics and computational biology. Packages graph, Rgraphviz, RBGL of Bioconductor (www.bioconductor.org).

MeSH Terms

Algorithms Computer Graphics Computer Simulation Gene Expression Regulation/physiology Information Storage and Retrieval/methods Internet Models, Biological Signal Transduction/physiology Transcription Factors/metabolism User-Computer Interface

Chemicals

Transcription Factors

Authors & Affiliations

4 authors, click to expand affiliations / ORCID

Carey Vincent J

Channing Laboratory, Brigham and Women's Hospital 75 Francis Street, Boston, MA 02115, USA. [email protected]

Gentry Jeff

Whalen Elizabeth

Gentleman Robert

Article Info

Journal

Bioinformatics (Oxford, England)

Abbr.

Bioinformatics

ISSN

1367-4803

DOI

10.1093/bioinformatics/bth458

[email protected]

Published

2005-01-01

Epub

2004-00-05

Pages

135-6

Language

English

Region

England

NLM ID

9808944

Subset

Grants

NHGRI NIH HHS · 1R33 HG002708 · United States

External Links

PubMed source DOI: 10.1093/bioinformatics/bth458 View journal details

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Network structures and algorithms in Bioconductor.

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