Home LiteratureArticle Details
PMID: 1556743 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Exons encoding the highly conserved part of human glutaminyl-tRNA synthetase.

Journal of molecular evolution ·Vol. 34 ·No. 1 ·1992-01-00 ·Pages 45-53

Kaiser E, Eberhard D, Knippers R

Abstract

Aminoacyl-tRNA synthetases are important components of the genetic apparatus. In spite of common catalytic properties, synthetases with different amino acid specificities are widely diverse in their primary structures, subunit sizes, and subunit composition. However, synthetases with given amino acid specificities are well conserved throughout evolution. We have been studying the human glutaminyl-tRNA synthetase possessing a sequence of about 400 amino acid residues (the core region) that is very similar to sequences in the corresponding enzymes from bacteria and yeast. The conserved sequence appears to be essential for the basic function of the enzyme, the charging of tRNA with glutamine. As a first step to a better understanding of the evolution of this enzyme, we determined the coding region for the conserved part of the human glutaminyl-tRNA synthetase. The coding region is composed of eight exons. It appears that individual exons encode defined secondary structural elements as parts of functionally important domains of the enzyme. Evolution of the gene by assembly of individual exons seems to be a viable hypothesis; alternative pathways are discussed.

Related Genes
MeSH Terms
Amino Acid Sequence Amino Acyl-tRNA Synthetases/genetics,metabolism Base Sequence DNA Exons Humans Introns Molecular Sequence Data Nucleic Acid Conformation Restriction Mapping Sequence Alignment
Chemicals
DNA Amino Acyl-tRNA Synthetases glutaminyl-tRNA synthetase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Kaiser E
Fakultät für Biologie, Universität Konstanz, Germany.
Eberhard D
Knippers R
References (27)
27 references, click to expand
  1. Do exons code for structural or functional units in proteins?
    Proc Natl Acad Sci U S A. 1988 May;85(9):2944-8 PMID: 3362858
  2. Isolation and electron microscopic characterization of the high molecular mass aminoacyl-tRNA synthetase complex from murine erythroleukemia cells.
    J Biol Chem. 1989 Sep 5;264(25):15043-51 PMID: 2768252
  3. Protein modules.
    Trends Biochem Sci. 1991 Jan;16(1):13-7 PMID: 2053133
  4. The role of introns in evolution.
    FEBS Lett. 1990 Aug 1;268(2):339-43 PMID: 2200714
  5. Gene for yeast glutamine tRNA synthetase encodes a large amino-terminal extension and provides a strong confirmation of the signature sequence for a group of the aminoacyl-tRNA synthetases.
    J Biol Chem. 1987 Aug 5;262(22):10801-6 PMID: 3301841
  6. The human QARS locus: assignment of the human gene for glutaminyl-tRNA synthetase to chromosome 1q32-42.
    Hum Genet. 1990 Oct;85(5):527-30 PMID: 2227938
  7. Protein architecture and the origin of introns.
    Cold Spring Harb Symp Quant Biol. 1987;52:915-24 PMID: 3454299
  8. A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 A.
    Nature. 1990 Sep 20;347(6290):249-55 PMID: 2205803
  9. Aminoacyl tRNA synthetases: general scheme of structure-function relationships in the polypeptides and recognition of transfer RNAs.
    Annu Rev Biochem. 1987;56:125-58 PMID: 3304131
  10. Structural organization of the multienzyme complex of mammalian aminoacyl-tRNA synthetases.
    Biochemistry. 1988 Sep 6;27(18):6921-8 PMID: 3196691
  11. Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs.
    Nature. 1990 Sep 13;347(6289):203-6 PMID: 2203971
  12. Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 A resolution.
    Science. 1989 Dec 1;246(4934):1135-42 PMID: 2479982
  13. Intron-dependent evolution: preferred types of exons and introns.
    FEBS Lett. 1987 Apr 6;214(1):1-7 PMID: 3552723
  14. The exon theory of genes.
    Cold Spring Harb Symp Quant Biol. 1987;52:901-5 PMID: 2456887
  15. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  16. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  17. Classes of aminoacyl-tRNA synthetases and the establishment of the genetic code.
    Trends Biochem Sci. 1991 Jan;16(1):1-3 PMID: 2053131
  18. Empirical predictions of protein conformation.
    Annu Rev Biochem. 1978;47:251-76 PMID: 354496
  19. The primary structure of human glutaminyl-tRNA synthetase. A highly conserved core, amino acid repeat regions, and homologies with translation elongation factors.
    J Biol Chem. 1991 Jan 25;266(3):1448-55 PMID: 1988429
  20. Exons--present from the beginning?
    Nature. 1983 Dec 8-14;306(5943):535-7 PMID: 6646232
  21. Escherichia coli glutaminyl-tRNA synthetase: a single amino acid replacement relaxes rRNA specificity.
    Protein Seq Data Anal. 1988;1(6):479-85 PMID: 2464170
  22. A survey on intron and exon lengths.
    Nucleic Acids Res. 1988 Nov 11;16(21):9893-908 PMID: 3057449
  23. How big is the universe of exons?
    Science. 1990 Dec 7;250(4986):1377-82 PMID: 2255907
  24. Glutaminyl-tRNA synthetase as a component of the high-molecular weight complex of human aminoacyl-tRNA synthetases. An immunological study.
    Biochim Biophys Acta. 1990 Oct 23;1087(2):226-34 PMID: 2223884
  25. The core region of human glutaminyl-tRNA synthetase homologies with the Escherichia coli and yeast enzymes.
    Nucleic Acids Res. 1988 Jun 24;16(12):5391-406 PMID: 3290852
  26. Intron phylogeny: a new hypothesis.
    Trends Genet. 1991 May;7(5):145-8 PMID: 2068786
  27. Why genes in pieces?
    Nature. 1978 Feb 9;271(5645):501 PMID: 622185
Article Info
Journal
Journal of molecular evolution
Abbr.
J Mol Evol
ISSN
0022-2844
Published
1992-01-00
Pages
45-53
Language
English
Region
Germany
NLM ID
0360051
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]