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PMID: 15596469 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Genome evolution in the genus Sorghum (Poaceae).

Annals of botany ·Vol. 95 ·No. 1 ·2005-01-00 ·Pages 219-27

Price HJ, Dillon SL, Hodnett G, Rooney WL, Ross L, Johnston JS

Abstract

The roles of variation in DNA content in plant evolution and adaptation remain a major biological enigma. Chromosome number and 2C DNA content were determined for 21 of the 25 species of the genus Sorghum and analysed from a phylogenetic perspective. DNA content was determined by flow cytometry. A Sorghum phylogeny was constructed based on combined nuclear ITS and chloroplast ndhF DNA sequences. Chromosome counts (2n = 10, 20, 30, 40) were, with few exceptions, concordant with published numbers. New chromosome numbers were obtained for S. amplum (2n = 30) and S. leiocladum (2n = 10). 2C DNA content varies 8.1-fold (1.27-10.30 pg) among the 21 Sorghum species. 2C DNA content varies 3.6-fold from 1.27 pg to 4.60 pg among the 2n = 10 species and 5.8-fold (1.52-8.79 pg) among the 2n = 20 species. The x = 5 genome size varies over an 8.8-fold range from 0.26 pg to 2.30 pg. The mean 2C DNA content of perennial species (6.20 pg) is significantly greater than the mean (2.92 pg) of the annuals. Among the 21 species studied, the mean x = 5 genome size of annuals (1.15 pg) and of perennials (1.29 pg) is not significantly different. Statistical analysis of Australian species showed: (a) mean 2C DNA content of annual (2.89 pg) and perennial (7.73 pg) species is significantly different; (b) mean x = 5 genome size of perennials (1.66 pg) is significantly greater than that of the annuals (1.09 pg); (c) the mean maximum latitude at which perennial species grow (-25.4 degrees) is significantly greater than the mean maximum latitude (-17.6) at which annual species grow. The DNA sequence phylogeny splits Sorghum into two lineages, one comprising the 2n = 10 species with large genomes and their polyploid relatives, and the other with the 2n = 20, 40 species with relatively small genomes. An apparent phylogenetic reduction in genome size has occurred in the 2n = 10 lineage. Genome size evolution in the genus Sorghum apparently did not involve a 'one way ticket to genomic obesity' as has been proposed for the grasses.

MeSH Terms
Cell Nucleus/genetics Chromosomes, Plant DNA, Plant/analysis,genetics Evolution, Molecular Genome, Plant Karyotyping Phylogeny Sorghum/classification,genetics
Chemicals
DNA, Plant
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Price H James
Department of Soil and Crop Sciences, Texas Agricultural Experiment Station, Texas A&M University, College Station, TX 77843-2474, USA. [email protected]
Dillon Sally L
Hodnett George
Rooney William L
Ross Larry
Johnston J Spencer
References (20)
20 references, click to expand
  1. Comparative genome mapping of Sorghum and maize.
    Genetics. 1992 Dec;132(4):1119-30 PMID: 1360933
  2. Mechanisms of recent genome size variation in flowering plants.
    Ann Bot. 2005 Jan;95(1):127-32 PMID: 15596462
  3. A detailed RFLP map of Sorghum bicolor x S. propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments.
    Theor Appl Genet. 1994 Mar;87(8):925-33 PMID: 24190526
  4. Comparative genetic mapping between duplicated segments on maize chromosomes 3 and 8 and homoeologous regions in sorghum and sugarcane.
    Theor Appl Genet. 1996 Jun;92(8):1024-30 PMID: 24166631
  5. Chromosomal variation and evolution.
    Science. 1966 Jun 10;152(3728):1463-9 PMID: 17788022
  6. Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb.
    Ann Bot. 2003 Apr;91(5):547-57 PMID: 12646499
  7. The genomic relationship between cultivated sorghum [Sorghum bicolor (L.) Moench] and Johnsongrass [S. halepense (L.) Pers.]: a re-evaluation.
    Theor Appl Genet. 1988 Aug;76(2):277-84 PMID: 24232116
  8. A RFLP linkage map of Sorghum bicolor (L.) Moench.
    Theor Appl Genet. 1994 Oct;89(2-3):139-45 PMID: 24177820
  9. Nuclear DNA content and minimum generation time in herbaceous plants.
    Proc R Soc Lond B Biol Sci. 1972 Jun 6;181(1063):109-35 PMID: 4403285
  10. Plant genome values: how much do we know?
    Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):2011-6 PMID: 9482826
  11. Do Plants Have a One-Way Ticket to Genomic Obesity?
    Plant Cell. 1997 Sep;9(9):1509-1514 PMID: 12237393
  12. A Polyhaploid Obtained from a Hybrid Derivative of Sorghum Halepense x S. Vulgare Var. Sudanense.
    Genetics. 1952 Jul;37(4):369-74 PMID: 17247399
  13. Distribution and sequence analysis of the centromere-associated repetitive element CEN38 of Sorghum bicolor (Poaceae).
    Am J Bot. 2000 Dec;87(12):1757-64 PMID: 11118410
  14. Reference standards for determination of DNA content of plant nuclei.
    Am J Bot. 1999 May;86(5):609-13 PMID: 10330063
  15. Feast and famine in plant genomes.
    Genetica. 2002 May;115(1):37-47 PMID: 12188047
  16. CLUSTAL V: improved software for multiple sequence alignment.
    Comput Appl Biosci. 1992 Apr;8(2):189-91 PMID: 1591615
  17. Rapid flow cytometric analysis of the cell cycle in intact plant tissues.
    Science. 1983 Jun 3;220(4601):1049-51 PMID: 17754551
  18. Construction of an RFLP map in sorghum and comparative mapping in maize.
    Genome. 1994 Apr;37(2):236-43 PMID: 18470074
  19. Evolution of genome size in the angiosperms.
    Am J Bot. 2003 Nov;90(11):1596-603 PMID: 21653334
  20. Structure and evolution of the genomes ofsorghum bicolor andZea mays.
    Theor Appl Genet. 1993 Jun;86(5):598-604 PMID: 24193709
Article Info
Journal
Annals of botany
Abbr.
Ann Bot
ISSN
0305-7364
Published
2005-01-00
Pages
219-27
Language
English
Region
England
NLM ID
0372347
PMCID
PMC4246720
Subset
IM
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