Home LiteratureArticle Details
PMID: 15653644 Published · epublish English Journal Article Research Support, Non-U.S. Gov't

Locked nucleic acid (LNA) mediated improvements in siRNA stability and functionality.

Nucleic acids research ·Vol. 33 ·No. 1 ·2005-00-00 ·Pages 439-47

Elmén J, Thonberg H, Ljungberg K, Frieden M, Westergaard M, Xu Y, Wahren B, Liang Z, Ørum H, Koch T, Wahlestedt C

Abstract

Therapeutic application of the recently discovered small interfering RNA (siRNA) gene silencing phenomenon will be dependent on improvements in molecule bio-stability, specificity and delivery. To address these issues, we have systematically modified siRNA with the synthetic RNA-like high affinity nucleotide analogue, Locked Nucleic Acid (LNA). Here, we show that incorporation of LNA substantially enhances serum half-life of siRNA's, which is a key requirement for therapeutic use. Moreover, we provide evidence that LNA is compatible with the intracellular siRNA machinery and can be used to reduce undesired, sequence-related off-target effects. LNA-modified siRNAs targeting the emerging disease SARS, show improved efficiency over unmodified siRNA on certain RNA motifs. The results from this study emphasize LNA's promise in converting siRNA from a functional genomics technology to a therapeutic platform.

MeSH Terms
Animals Cell Line Chlorocebus aethiops Humans Oligonucleotides Oligonucleotides, Antisense/chemistry PC12 Cells RNA Interference RNA Stability RNA, Small Interfering/blood,chemistry,pharmacology Rats Vero Cells
Chemicals
Oligonucleotides Oligonucleotides, Antisense RNA, Small Interfering locked nucleic acid
Authors & Affiliations
11 authors, click to expand affiliations / ORCID
Elmén Joacim
Center for Genomics and Bioinformatics, Karolinska Institutet 171 77 Stockholm, Sweden. [email protected]
Thonberg Håkan
Ljungberg Karl
Frieden Miriam
Westergaard Majken
Xu Yunhe
Wahren Britta
Liang Zicai
Ørum Henrik
Koch Troels
Wahlestedt Claes
References (27)
27 references, click to expand
  1. A species of small antisense RNA in posttranscriptional gene silencing in plants.
    Science. 1999 Oct 29;286(5441):950-2 PMID: 10542148
  2. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.
    Nature. 1998 Feb 19;391(6669):806-11 PMID: 9486653
  3. Potent and nontoxic antisense oligonucleotides containing locked nucleic acids.
    Proc Natl Acad Sci U S A. 2000 May 9;97(10):5633-8 PMID: 10805816
  4. The use of TaqMan RT-PCR assays for semiquantitative analysis of gene expression in CNS tissues and disease models.
    J Neurosci Methods. 2000 May 15;98(1):9-20 PMID: 10837866
  5. Structural studies of LNA:RNA duplexes by NMR: conformations and implications for RNase H activity.
    Chemistry. 2000 Aug 4;6(15):2687-95 PMID: 10985717
  6. RNA interference is mediated by 21- and 22-nucleotide RNAs.
    Genes Dev. 2001 Jan 15;15(2):188-200 PMID: 11157775
  7. Locked nucleic acid (LNA): fine-tuning the recognition of DNA and RNA.
    Chem Biol. 2001 Jan;8(1):1-7 PMID: 11182314
  8. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.
    Nature. 2001 May 24;411(6836):494-8 PMID: 11373684
  9. ATP requirements and small interfering RNA structure in the RNA interference pathway.
    Cell. 2001 Nov 2;107(3):309-21 PMID: 11701122
  10. Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate.
    EMBO J. 2001 Dec 3;20(23):6877-88 PMID: 11726523
  11. Design of antisense oligonucleotides stabilized by locked nucleic acids.
    Nucleic Acids Res. 2002 May 1;30(9):1911-8 PMID: 11972327
  12. Design and characterization of decoy oligonucleotides containing locked nucleic acids.
    Nucleic Acids Res. 2002 Jun 1;30(11):2435-43 PMID: 12034831
  13. RNAi in human cells: basic structural and functional features of small interfering RNA.
    Mol Cell. 2002 Sep;10(3):549-61 PMID: 12408823
  14. Antisense inhibition of gene expression in cells by oligonucleotides incorporating locked nucleic acids: effect of mRNA target sequence and chimera design.
    Nucleic Acids Res. 2002 Dec 1;30(23):5160-7 PMID: 12466540
  15. Tolerance for mutations and chemical modifications in a siRNA.
    Nucleic Acids Res. 2003 Jan 15;31(2):589-95 PMID: 12527766
  16. Structural variations and stabilising modifications of synthetic siRNAs in mammalian cells.
    Nucleic Acids Res. 2003 Jun 1;31(11):2705-16 PMID: 12771196
  17. Expression profiling reveals off-target gene regulation by RNAi.
    Nat Biotechnol. 2003 Jun;21(6):635-7 PMID: 12754523
  18. Killing the messenger: short RNAs that silence gene expression.
    Nat Rev Mol Cell Biol. 2003 Jun;4(6):457-67 PMID: 12778125
  19. Sequence, chemical, and structural variation of small interfering RNAs and short hairpin RNAs and the effect on mammalian gene silencing.
    Antisense Nucleic Acid Drug Dev. 2003 Apr;13(2):83-105 PMID: 12804036
  20. Effective small interfering RNAs and phosphorothioate antisense DNAs have different preferences for target sites in the luciferase mRNAs.
    Biochem Biophys Res Commun. 2003 Jul 4;306(3):712-7 PMID: 12810077
  21. RNA interference in mammalian cells by chemically-modified RNA.
    Biochemistry. 2003 Jul 8;42(26):7967-75 PMID: 12834349
  22. Asymmetry in the assembly of the RNAi enzyme complex.
    Cell. 2003 Oct 17;115(2):199-208 PMID: 14567917
  23. Functional siRNAs and miRNAs exhibit strand bias.
    Cell. 2003 Oct 17;115(2):209-16 PMID: 14567918
  24. Rational siRNA design for RNA interference.
    Nat Biotechnol. 2004 Mar;22(3):326-30 PMID: 14758366
  25. siRNAs: applications in functional genomics and potential as therapeutics.
    Nat Rev Drug Discov. 2004 Apr;3(4):318-29 PMID: 15060527
  26. Characterization of RNA interference in rat PC12 cells: requirement of GERp95.
    Biochem Biophys Res Commun. 2004 Jun 11;318(4):927-34 PMID: 15147961
  27. RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals.
    Cell. 2000 Mar 31;101(1):25-33 PMID: 10778853
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2005-00-00
Epub
2005-00-14
Pages
439-47
Language
English
Region
England
NLM ID
0411011
PMCID
PMC546170
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]