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PMID: 15853065 Published · ppublish hun English Abstract Journal Article Review

[The problem of multiple testing and solutions for genome-wide studies].

A "multiple testing" problémája és a genomiális kísérletekre alkalmazott megoldások.

Orvosi hetilap ·Vol. 146 ·No. 12 ·2005-03-20 ·Pages 559-63

Gyorffy B, Gyorffy A, Tulassay Z

Abstract

The problem of multiple testing and its solutions for genome-wide studies. Even if there is no real change, the traditional p = 0.05 can cause 5% of the investigated tests being reported significant. Multiple testing corrections have been developed to solve this problem. Here the authors describe the one-step (Bonferroni), multi-step (step-down and step-up) and graphical methods. However, sometimes a correction for multiple testing creates more problems, than it solves: the universal null hypothesis is of little interest, the exact number of investigations to be adjusted for can not determined and the probability of type II error increases. For these reasons the authors suggest not to perform multiple testing corrections routinely. The calculation of the false discovery rate is a new method for genome-wide studies. Here the p value is substituted by the q value, which also shows the level of significance. The q value belonging to a measurement is the proportion of false positive measurements when we accept it as significant. The authors propose using the q value instead of the p value in genome-wide studies.

MeSH Terms
Confidence Intervals Data Interpretation, Statistical False Positive Reactions Genomics Humans In Situ Hybridization Models, Statistical Research Design/standards
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Gyorffy Balázs
Marie-Curie ösztöndíjas, Funkcionális Genomikai Kutatócsoport, Patológiai Intézet, Charite, Humboldt Egyetem, Berlin. [email protected]
Gyorffy András
Tulassay Zsolt
Article Info
Journal
Orvosi hetilap
Abbr.
Orv Hetil
ISSN
0030-6002
Published
2005-03-20
Pages
559-63
Language
hun
Region
Hungary
NLM ID
0376412
Subset
IM
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