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PMID: 15960624 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses.

The Plant journal : for cell and molecular biology ·Vol. 43 ·No. 1 ·2005-07-00 ·Pages 153-63

Toufighi K, Brady SM, Austin R, Ly E, Provart NJ

Abstract

The Botany Array Resource provides the means for obtaining and archiving microarray data for Arabidopsis thaliana as well as biologist-friendly tools for viewing and mining both our own and other's data, for example, from the AtGenExpress Consortium. All the data produced are publicly available through the web interface of the database at http://bbc.botany.utoronto.ca. The database has been designed in accordance with the Minimum Information About a Microarray Experiment convention -- all expression data are associated with the corresponding experimental details. The database is searchable and it also provides a set of useful and easy-to-use web-based data-mining tools for researchers with sophisticated yet understandable output graphics. These include Expression Browser for performing 'electronic Northerns', Expression Angler for identifying genes that are co-regulated with a gene of interest, and Promomer for identifying potential cis-elements in the promoters of individual or co-regulated genes.

MeSH Terms
Arabidopsis/genetics Databases, Genetic Gene Expression Regulation, Plant Microarray Analysis Software
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Toufighi Kiana
Department of Botany, University of Toronto, 25 Willcocks Street, Toronto, ON, M5S 3B2 Canada.
Brady Siobhan M
Austin Ryan
Ly Eugene
Provart Nicholas J
Article Info
Journal
The Plant journal : for cell and molecular biology
Abbr.
Plant J
ISSN
0960-7412
Published
2005-07-00
Pages
153-63
Language
English
Region
England
NLM ID
9207397
Subset
IM
Analysis Services
Analysis Services

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