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PMID: 16185861 Published · ppublish English Journal Article Review

The microbial pan-genome.

Current opinion in genetics & development ·Vol. 15 ·No. 6 ·2005-12-00 ·Pages 589-94

Medini D, Donati C, Tettelin H, Masignani V, Rappuoli R

Abstract

A decade after the beginning of the genomic era, the question of how genomics can describe a bacterial species has not been fully addressed. Experimental data have shown that in some species new genes are discovered even after sequencing the genomes of several strains. Mathematical modeling predicts that new genes will be discovered even after sequencing hundreds of genomes per species. Therefore, a bacterial species can be described by its pan-genome, which is composed of a "core genome" containing genes present in all strains, and a "dispensable genome" containing genes present in two or more strains and genes unique to single strains. Given that the number of unique genes is vast, the pan-genome of a bacterial species might be orders of magnitude larger than any single genome.

MeSH Terms
Animals Bacteria/genetics Bacterial Physiological Phenomena Evolution, Molecular Genome, Bacterial/physiology Genomics Humans
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Medini Duccio
Immunobiological Research Institute of Siena (IRIS), Chiron Vaccines, via Fiorentina 1, 53100 Siena, Italy.
Donati Claudio
Tettelin Hervé
Masignani Vega
Rappuoli Rino
Article Info
Journal
Current opinion in genetics & development
Abbr.
Curr Opin Genet Dev
ISSN
0959-437X
Published
2005-12-00
Epub
2005-00-26
Pages
589-94
Language
English
Region
England
NLM ID
9111375
Subset
IM
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