Abstract
Recent analyses have shown that the activity of the yeast nuclear exosome is stimulated by the Trf4p-Air1/2p-Mtr4p polyadenylation (TRAMP) complex. Here, we report that strains lacking the Rrp6p component of the nuclear exosome accumulate polyadenylated forms of many different ribosomal RNA precursors (pre-rRNAs). This polyadenylation is reduced in strains lacking either the poly(A) polymerase Trf4p or its close homologue Trf5p. In contrast, polyadenylation is enhanced by overexpression of Trf5p. Polyadenylation is also markedly increased in strains lacking the RNA helicase Mtr4p, indicating that it is required to couple poly(A) polymerase activity to degradation. Tandem affinity purification-tagged purified Trf5p showed polyadenylation activity in vitro, which was abolished by a double point mutation in the predicted catalytic site. Trf5p co-purified with Mtr4p and Air1p, indicating that it forms a complex, designated TRAMP5, that has functions that partially overlap with the TRAMP complex.
MeSH Terms
Amino Acid Sequence
Cell Nucleus/metabolism
DNA-Directed RNA Polymerases/chemistry,genetics,metabolism
Genes, Fungal
In Vitro Techniques
Molecular Sequence Data
Point Mutation
Polyadenylation
Polynucleotide Adenylyltransferase/metabolism
RNA Helicases/metabolism
RNA, Fungal/genetics,metabolism
RNA, Messenger/metabolism
Saccharomyces cerevisiae/enzymology,genetics,growth & development,metabolism
Saccharomyces cerevisiae Proteins/chemistry,genetics,metabolism
Chemicals
RNA, Fungal
RNA, Messenger
Saccharomyces cerevisiae Proteins
Polynucleotide Adenylyltransferase
DNA-Directed RNA Polymerases
Trf5 protein, S cerevisiae
RNA Helicases
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Houseley Jonathan
Wellcome Trust Centre for Cell Biology, University of Edinburgh, Swann Building, King's Buildings, Edinburgh EH9 3JR, UK.
Tollervey David
References (20)
20 references, click to expand
-
Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs.
Mol Cell Biol. 2000 Jan;20(2):441-52
PMID: 10611222
-
A new yeast poly(A) polymerase complex involved in RNA quality control.
PLoS Biol. 2005 Jun;3(6):e189
PMID: 15828860
-
Identification of a regulated pathway for nuclear pre-mRNA turnover.
Cell. 2000 Sep 15;102(6):765-75
PMID: 11030620
-
Cid13 is a cytoplasmic poly(A) polymerase that regulates ribonucleotide reductase mRNA.
Cell. 2002 May 31;109(5):563-73
PMID: 12062100
-
A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans.
Nature. 2002 Sep 19;419(6904):312-6
PMID: 12239571
-
Global analysis of protein localization in budding yeast.
Nature. 2003 Oct 16;425(6959):686-91
PMID: 14562095
-
Mammalian GLD-2 homologs are poly(A) polymerases.
Proc Natl Acad Sci U S A. 2004 Mar 30;101(13):4407-12
PMID: 15070731
-
Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae.
Genes Dev. 2004 Jun 1;18(11):1227-40
PMID: 15145828
-
Polyadenylation of rRNA in Saccharomyces cerevisiae.
Proc Natl Acad Sci U S A. 2004 Jun 8;101(23):8581-6
PMID: 15173578
-
A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA.
EMBO J. 1987 Dec 20;6(13):4169-75
PMID: 3327689
-
Improved method for high efficiency transformation of intact yeast cells.
Nucleic Acids Res. 1992 Mar 25;20(6):1425
PMID: 1561104
-
U24, a novel intron-encoded small nucleolar RNA with two 12 nt long, phylogenetically conserved complementarities to 28S rRNA.
Nucleic Acids Res. 1995 Jul 25;23(14):2669-76
PMID: 7651828
-
A novel family of TRF (DNA topoisomerase I-related function) genes required for proper nuclear segregation.
Nucleic Acids Res. 1996 Jun 15;24(12):2404-10
PMID: 8710513
-
The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases.
Cell. 1997 Nov 14;91(4):457-66
PMID: 9390555
-
Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae.
EMBO J. 1998 Feb 16;17(4):1128-40
PMID: 9463390
-
A generic protein purification method for protein complex characterization and proteome exploration.
Nat Biotechnol. 1999 Oct;17(10):1030-2
PMID: 10504710
-
Functions of the exosome in rRNA, snoRNA and snRNA synthesis.
EMBO J. 1999 Oct 1;18(19):5399-410
PMID: 10508172
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.
Cell. 2005 Jun 3;121(5):713-24
PMID: 15935758
-
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.
Cell. 2005 Jun 3;121(5):725-37
PMID: 15935759
-
Cid1, a fission yeast protein required for S-M checkpoint control when DNA polymerase delta or epsilon is inactivated.
Mol Cell Biol. 2000 May;20(9):3234-44
PMID: 10757807