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PMID: 16381919 Published · ppublish English Journal Article Research Support, N.I.H., Intramural Research Support, U.S. Gov't, Non-P.H.S.

StellaBase: the Nematostella vectensis Genomics Database.

Nucleic acids research ·Vol. 34 ·No. Database issue ·2006-01-01 ·Pages D495-9

Sullivan JC, Ryan JF, Watson JA, Webb J, Mullikin JC, Rokhsar D, Finnerty JR

Abstract

StellaBase, the Nematostella vectensis Genomics Database, is a web-based resource that will facilitate desktop and bench-top studies of the starlet sea anemone. Nematostella is an emerging model organism that has already proven useful for addressing fundamental questions in developmental evolution and evolutionary genomics. StellaBase allows users to query the assembled Nematostella genome, a confirmed gene library, and a predicted genome using both keyword and homology based search functions. Data provided by these searches will elucidate gene family evolution in early animals. Unique research tools, including a Nematostella genetic stock library, a primer library, a literature repository and a gene expression library will provide support to the burgeoning Nematostella research community. The development of StellaBase accompanies significant upgrades to CnidBase, the Cnidarian Evolutionary Genomics Database. With the completion of the first sequenced cnidarian genome, genome comparison tools have been added to CnidBase. In addition, StellaBase provides a framework for the integration of additional species-specific databases into CnidBase. StellaBase is available at http://www.stellabase.org.

MeSH Terms
Animals Databases, Genetic Evolution, Molecular Gene Expression Genomics Internet Oligonucleotide Probes/chemistry Proteins/genetics Sea Anemones/genetics,metabolism Systems Integration User-Computer Interface
Chemicals
Oligonucleotide Probes Proteins
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Sullivan James C
Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA.
Ryan Joseph F
Watson James A
Webb Jeramy
Mullikin James C
Rokhsar Daniel
Finnerty John R
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2006-01-01
Pages
D495-9
Language
English
Region
England
NLM ID
0411011
PMCID
PMC1347383
Subset
IM
Grants
Intramural NIH HHS · United States
Analysis Services
Analysis Services

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